CYP3A4 (Cytochrome P450 3A4) variants and mutations
CYP3A4 (also known as Cytochrome P450 3A4) is a human protein-coding gene encoding a cytochrome P450 3A4 protein. It performs oxidative metabolism for a remarkably large fraction of prescribed drugs in the intestine and liver. Enzyme induction, inhibition, disease state, and genetics can produce large changes in systemic drug exposure and drug-drug interactions. This analysis covers 753 CYP3A4 variants and mutations. Of these, 97% have computational variant effect predictions. Disease context includes HIV infectious disease, HIV-1 infection, and hepatitis C virus infection. Example CYP3A4 variants include A2D, A2G, and A2T.
Variant analysis overview
- Gene: CYP3A4
- Protein: Cytochrome P450 3A4
- UniProt accession: P08684
- Organism: Homo sapiens
- Variants analyzed: 753
- Variant scope: all variants
- Completed: 2026-08-18
Variant and mutation evidence
- Variant composition: 526 unspecified-consequence records; 2 stop lost; 1 stop retained variant; 89 synonymous variants; 23 frameshift variants; 93 missense variants; 4 splice-region variants; 6 in-frame deletions; 2 in-frame insertions; 4 stop-gained variants; 3 substitution
- Prediction scores: 734 variants have prediction scores (97% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: HIV infectious disease, HIV-1 infection, hepatitis C virus infection, chronic hepatitis C virus infection, infection, COVID-19, Cirrhosis, Hypocalcemic vitamin D-resistant rickets, viral infectious disease, neurodegenerative disease, hepatitis B virus infection, tuberculosis.
Protein structure and variant hotspots
- Protein features: 1 transmembrane segments; 1 binding sites.
- Structural context: 27 variants have structural context.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable CYP3A4 variants
Examples include A2D, A2G, A2T, A2V, L3P, L3V, I4T, P5S. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- A2D (p.Ala2Asp), rs371360704, 1000Genomes rs371360704, ESP rs371360704, ExAC rs371360704, CADD 1.44, PolyPhen-2 0.00, Variant assessed as somatic; moderate impact.
- A2G (p.Ala2Gly), 1000Genomes rs371360704, ESP rs371360704, ExAC rs371360704, TOPMed rs371360704, CADD 7.48, PolyPhen-2 0.00
- A2T (p.Ala2Thr), TOPMed rs1226205448, gnomAD rs1226205448, CADD 8.00, PolyPhen-2 0.00
- A2V (p.Ala2Val), 1000Genomes rs371360704, ESP rs371360704, ExAC rs371360704, TOPMed rs371360704, CADD 12.90, PolyPhen-2 0.02
- L3P (p.Leu3Pro), TOPMed rs1433650597, gnomAD rs1433650597, CADD 20.30, PolyPhen-2 0.84
- L3V (p.Leu3Val), 1000Genomes rs188389063, ExAC rs188389063, gnomAD rs188389063, CADD 8.25, PolyPhen-2 0.26
- I4T (p.Ile4Thr), 1000Genomes rs200158762, MetaLR 0.05, MetaSVM -1.09
- P5S (p.Pro5Ser), TOPMed rs1326360530, CADD 7.52, PolyPhen-2 0.18
- D6E (p.Asp6Glu), ESP rs140355261, TOPMed rs140355261, CADD 2.90, PolyPhen-2 0.00
- D6N (p.Asp6Asn), cosmic curated COSV60503, TOPMed rs1816000223, MetaLR 0.01, MetaSVM -0.95
- A8P (p.Ala8Pro), TOPMed rs1225866854
- A8V (p.Ala8Val), Ensembl rs1815999735, CADD 16.90, PolyPhen-2 0.10
- M9L (p.Met9Leu), TOPMed rs1815999616, CADD 0.00, PolyPhen-2 0.00
- M9V (p.Met9Val), NCI-TCGA Cosmic COSV6050, cosmic curated COSV60500, TOPMed rs1815999616, CADD 0.00, PolyPhen-2 0.00, Variant assessed as somatic; moderate impact.
- E10Q (p.Glu10Gln), gnomAD rs1170926977, CADD 16.10, PolyPhen-2 0.21
- T11I (p.Thr11Ile), ExAC rs201431447, TOPMed rs201431447, gnomAD rs201431447, CADD 22.90, PolyPhen-2 0.98
- W12C (p.Trp12Cys), gnomAD rs1178534862, CADD 23.30, PolyPhen-2 1.00
- L14F (p.Leu14Phe), cosmic curated COSV60501, TOPMed rs1815998525, gnomAD rs1815998525, CADD 9.18
- L15P (p.Leu15Pro), rs12721634, UniProt VAR 011597, Ensembl rs12721634, AlphaMissense 0.17, MetaLR 0.05, Benign, in allele CYP3A4*14
- V17I (p.Val17Ile), gnomAD rs1266558880, CADD 0.28, PolyPhen-2 0.00
- S18R (p.Ser18Arg), ExAC rs763532571, gnomAD rs763532571, CADD 17.40, PolyPhen-2 0.17
- L19Q (p.Leu19Gln), ExAC rs773224444, CADD 24.70, PolyPhen-2 0.93
- V20A (p.Val20Ala), TOPMed rs982819228
- V20L (p.Val20Leu), ESP rs370065470, ExAC rs370065470, TOPMed rs370065470, gnomAD rs370065470
- V20M (p.Val20Met), ESP rs370065470, ExAC rs370065470, TOPMed rs370065470, gnomAD rs370065470, CADD 15.20, PolyPhen-2 0.04
- L21V (p.Leu21Val), ExAC rs761240600, gnomAD rs761240600, CADD 23.00, PolyPhen-2 0.84
- L22V (p.Leu22Val), 1000Genomes rs570051168, ExAC rs570051168, TOPMed rs570051168, gnomAD rs570051168, CADD 12.30, PolyPhen-2 0.03
- Y25H (p.Tyr25His), rs2485909112, ClinGen CA368374567, ClinVar RCV004327275, Uncertain significance, not specified
- T27I (p.Thr27Ile), gnomAD rs1423614420, CADD 10.00, PolyPhen-2 0.00
- H28Q (p.His28Gln), Ensembl rs1158725638, MetaLR 0.01, MetaSVM -1.01
- H28R (p.His28Arg), ExAC rs751254421, gnomAD rs751254421, CADD 3.84, PolyPhen-2 0.00
- S29T (p.Ser29Thr), ExAC rs766855441, gnomAD rs766855441, CADD 0.94, PolyPhen-2 0.00
- H30D (p.His30Asp), Ensembl rs78764657, MetaLR 0.03, MetaSVM -1.03
- H30R (p.His30Arg), gnomAD rs1488928031, CADD 16.80, PolyPhen-2 0.39
- G31E (p.Gly31Glu), ExAC rs758735253, gnomAD rs758735253, CADD 17.80, PolyPhen-2 0.02
- K34E (p.Lys34Glu), ExAC rs750918249, gnomAD rs750918249, CADD 23.00, PolyPhen-2 0.04
- K35R (p.Lys35Arg), ExAC rs765739949, gnomAD rs765739949, CADD 22.40, PolyPhen-2 0.02
- L36F (p.Leu36Phe), ESP rs370199610, ExAC rs370199610, TOPMed rs370199610, gnomAD rs370199610, CADD 18.40, PolyPhen-2 0.57
- L36R (p.Leu36Arg), ExAC rs764141268, gnomAD rs764141268, CADD 22.60, PolyPhen-2 0.17
- L36V (p.Leu36Val), ESP rs370199610, ExAC rs370199610, TOPMed rs370199610, gnomAD rs370199610, CADD 13.40, PolyPhen-2 0.01
- G37R (p.Gly37Arg), Ensembl rs2151566806
- I38V (p.Ile38Val), TOPMed rs1339677129, gnomAD rs1339677129, CADD 15.90, PolyPhen-2 0.09
- P39L (p.Pro39Leu), 1000Genomes rs760951972, ExAC rs760951972, gnomAD rs760951972, CADD 26.60, PolyPhen-2 0.98
- G40E (p.Gly40Glu), ExAC rs770725289, TOPMed rs770725289, gnomAD rs770725289, CADD 23.40, PolyPhen-2 1.00
- G40R (p.Gly40Arg), TOPMed rs1815877747
- P41L (p.Pro41Leu), TOPMed rs993959640, MetaLR 0.56, MetaSVM 0.20
- T42A (p.Thr42Ala), gnomAD rs1297487032, CADD 15.80, PolyPhen-2 0.00
- T42I (p.Thr42Ile), TOPMed rs1418008703, gnomAD rs1418008703, MetaLR 0.03, MetaSVM -1.05
- T42K (p.Thr42Lys), TOPMed rs1418008703, gnomAD rs1418008703, CADD 0.01, PolyPhen-2 0.00
- P43L (p.Pro43Leu), ESP rs146568511, ExAC rs146568511, TOPMed rs146568511, gnomAD rs146568511, CADD 23.50, PolyPhen-2 1.00
- P43R (p.Pro43Arg), ESP rs146568511, ExAC rs146568511, TOPMed rs146568511, gnomAD rs146568511, CADD 23.30, PolyPhen-2 1.00
- P43S (p.Pro43Ser), ESP rs367582027, ExAC rs367582027, TOPMed rs367582027, gnomAD rs367582027, CADD 23.20, PolyPhen-2 0.95
- P45L (p.Pro45Leu), gnomAD rs897005504, CADD 23.50, PolyPhen-2 0.97
- G48E (p.Gly48Glu), rs1366906328, NCI-TCGA Cosmic COSV6050, gnomAD rs1366906328, AlphaMissense 0.95, MetaLR 0.38, Variant assessed as somatic; moderate impact.
- N49D (p.Asn49Asp), ExAC rs748023655, gnomAD rs748023655, CADD 19.20, PolyPhen-2 0.35
- N49T (p.Asn49Thr), rs1259521795, TOPMed rs1259521795, gnomAD rs1259521795, CADD 0.00, Variant assessed as somatic; moderate impact.
- I50T (p.Ile50Thr), ESP rs374028591, ExAC rs374028591, gnomAD rs374028591, CADD 8.30, PolyPhen-2 0.05
- L51* (p.Leu51Ter), Ensembl rs2151566755
- S52F (p.Ser52Phe), TOPMed rs1815875744, MetaLR 0.01, MetaSVM -1.01
- Y53H (p.Tyr53His), ExAC rs746675088, TOPMed rs746675088, gnomAD rs746675088, CADD 19.80, PolyPhen-2 0.14
- H54R (p.His54Arg), ExAC rs779806677, TOPMed rs779806677, gnomAD rs779806677, CADD 0.48, PolyPhen-2 0.00
- K55Q (p.Lys55Gln), TOPMed rs1210093449, gnomAD rs1210093449, CADD 0.54, PolyPhen-2 0.01
- G56C (p.Gly56Cys), Ensembl rs2151565622, SIFT 0.71
- G56D (p.Gly56Asp), rs56324128, UniProt VAR 011598, 1000Genomes rs56324128, ESP rs56324128, CADD 25.30, PolyPhen-2 1.00, Benign, in allele CYP3A4*7
- C58R (p.Cys58Arg), TOPMed rs1815819162, gnomAD rs1815819162, CADD 10.30, PolyPhen-2 0.02
- F60L (p.Phe60Leu), ExAC rs754353680, TOPMed rs754353680, gnomAD rs754353680, CADD 22.80, PolyPhen-2 0.42
- M62K (p.Met62Lys), ExAC rs778202770, gnomAD rs778202770, CADD 0.01, PolyPhen-2 0.00
- E63* (p.Glu63Ter), ExAC rs752813465, gnomAD rs752813465, CADD 32.00
- E63K (p.Glu63Lys), ExAC rs752813465, gnomAD rs752813465, CADD 7.48, PolyPhen-2 0.03
- C64S (p.Cys64Ser), TOPMed rs912646349, gnomAD rs912646349, CADD 22.00, PolyPhen-2 0.98
- K66R (p.Lys66Arg), TOPMed rs1407019774, gnomAD rs1407019774, CADD 10.50, PolyPhen-2 0.02
- K67N (p.Lys67Asn), ESP rs371184172, ExAC rs371184172, TOPMed rs371184172, gnomAD rs371184172, CADD 22.70, PolyPhen-2 0.82
- K67R (p.Lys67Arg), ESP rs140422742, ExAC rs140422742, TOPMed rs140422742, gnomAD rs140422742, CADD 26.50, PolyPhen-2 0.90
- K67T (p.Lys67Thr), ESP rs140422742, ExAC rs140422742, TOPMed rs140422742, gnomAD rs140422742, CADD 23.60, PolyPhen-2 0.71
- Y68C (p.Tyr68Cys), ESP rs59418896, ExAC rs59418896, TOPMed rs59418896, gnomAD rs59418896, CADD 24.00, PolyPhen-2 0.78
- Y68H (p.Tyr68His), gnomAD rs1237168886, CADD 25.10, PolyPhen-2 0.99
- G69R (p.Gly69Arg), ExAC rs776743510, gnomAD rs776743510, CADD 29.20, PolyPhen-2 0.80
- W72G (p.Trp72Gly), TOPMed rs1329616238, CADD 32.00, PolyPhen-2 0.96
- W72L (p.Trp72Leu), TOPMed rs1345846163, gnomAD rs1345846163, CADD 23.30, PolyPhen-2 0.24
- G73V (p.Gly73Val), NCI-TCGA TCGA novel, TOPMed rs1815817451, gnomAD rs1815817451, CADD 34.00, Variant assessed as somatic; moderate impact.
- Y75C (p.Tyr75Cys), Ensembl rs1815665114, CADD 22.60, PolyPhen-2 1.00
- G77R (p.Gly77Arg), TOPMed rs1446253503, gnomAD rs1446253503, CADD 24.60, PolyPhen-2 0.98
- G77V (p.Gly77Val), gnomAD rs1343000941, CADD 24.70, PolyPhen-2 1.00
- Q78H (p.Gln78His), ESP rs377322915, ExAC rs377322915, TOPMed rs377322915, gnomAD rs377322915
- Q78R (p.Gln78Arg), Ensembl rs2151562168
- Q79R (p.Gln79Arg), ExAC rs751832143, gnomAD rs751832143, CADD 13.80, PolyPhen-2 0.01
- V81A (p.Val81Ala), gnomAD rs1406701067, CADD 21.10, PolyPhen-2 0.06
- V81L (p.Val81Leu), gnomAD rs1156523076, CADD 3.17, PolyPhen-2 0.00
- L82V (p.Leu82Val), ExAC rs758665522, gnomAD rs758665522, CADD 14.50, PolyPhen-2 0.52
- A83G (p.Ala83Gly), gnomAD rs1815664210, MetaLR 0.30, MetaSVM -0.63
- M89V (p.Met89Val), TOPMed rs1474094886, gnomAD rs1474094886, CADD 9.56, PolyPhen-2 0.05
- I90T (p.Ile90Thr), TOPMed rs1194211831, gnomAD rs1194211831, CADD 24.80, PolyPhen-2 0.97
- I90V (p.Ile90Val), gnomAD rs1265327980, CADD 16.30, PolyPhen-2 0.03
- K91Q (p.Lys91Gln), ExAC rs763972158, TOPMed rs763972158, gnomAD rs763972158, CADD 24.30, PolyPhen-2 0.78
- T92I (p.Thr92Ile), Ensembl rs1815663396, CADD 22.70, PolyPhen-2 0.26
- V95G (p.Val95Gly), TOPMed rs1815663022, CADD 26.60, PolyPhen-2 1.00
- K96E (p.Lys96Glu), rs3091339, UniProt VAR 037547, ESP rs3091339, ExAC rs3091339, CADD 26.20, PolyPhen-2 1.00
- E97D (p.Glu97Asp), gnomAD rs1460525618, CADD 19.40
- C98R (p.Cys98Arg), gnomAD rs1289416239, CADD 25.00, PolyPhen-2 0.99
- C98Y (p.Cys98Tyr), ExAC rs775220785, gnomAD rs775220785, CADD 23.70, PolyPhen-2 0.98
- Y99H (p.Tyr99His), TOPMed rs1204085771, CADD 23.00, PolyPhen-2 0.20
- S100F (p.Ser100Phe), gnomAD rs1320368777, CADD 25.20, PolyPhen-2 0.99
- V101F (p.Val101Phe), ExAC rs767064297, gnomAD rs767064297, CADD 13.30, PolyPhen-2 0.08
- F102L (p.Phe102Leu), Ensembl rs2151562077, MetaLR 0.67, MetaSVM 0.64
- R105L (p.Arg105Leu), ExAC rs774082727, TOPMed rs774082727, gnomAD rs774082727, CADD 24.60, PolyPhen-2 0.98
- R105Q (p.Arg105Gln), ExAC rs774082727, TOPMed rs774082727, gnomAD rs774082727, CADD 24.50, PolyPhen-2 0.84
- R105W (p.Arg105Trp), ESP rs142296281, ExAC rs142296281, TOPMed rs142296281, gnomAD rs142296281, CADD 24.40, PolyPhen-2 1.00
- R106K (p.Arg106Lys), ExAC rs770609053, TOPMed rs770609053, gnomAD rs770609053, CADD 20.40, PolyPhen-2 0.09
- R106T (p.Arg106Thr), ExAC rs770609053, TOPMed rs770609053, gnomAD rs770609053, CADD 22.80, PolyPhen-2 0.55
- P107L (p.Pro107Leu), ExAC rs748422560, gnomAD rs748422560, CADD 3.09, PolyPhen-2 0.02
- P107R (p.Pro107Arg), ExAC rs748422560, gnomAD rs748422560, CADD 0.81, PolyPhen-2 0.01
- G109C (p.Gly109Cys), ExAC rs777024826, TOPMed rs777024826, gnomAD rs777024826, CADD 23.10, PolyPhen-2 0.30
- G109D (p.Gly109Asp), TOPMed rs1332595521, CADD 19.40, PolyPhen-2 0.17
- G109R (p.Gly109Arg), ExAC rs777024826, TOPMed rs777024826, gnomAD rs777024826, CADD 18.70, PolyPhen-2 0.25
- G109S (p.Gly109Ser), ExAC rs777024826, TOPMed rs777024826, gnomAD rs777024826, CADD 20.80, PolyPhen-2 0.40, Uncertain significance, Vitamin D-dependent rickets, type 3
- G112R (p.Gly112Arg), gnomAD rs1192020117, CADD 24.10, PolyPhen-2 0.62
- F113I (p.Phe113Ile), TOPMed rs1449865051
- F113L (p.Phe113Leu), gnomAD rs1198477603, CADD 13.80, PolyPhen-2 0.00
- F113S (p.Phe113Ser), gnomAD rs1238996797, CADD 18.70, PolyPhen-2 0.05
- M114K (p.Met114Lys), gnomAD rs1479859158, CADD 23.40, PolyPhen-2 0.08
- S116C (p.Ser116Cys), TOPMed rs1563042648, gnomAD rs1563042648, CADD 17.70, PolyPhen-2 0.16
- S116T (p.Ser116Thr), TOPMed rs1338084454, CADD 0.11, PolyPhen-2 0.01
- A117T (p.Ala117Thr), gnomAD rs1211366206, CADD 17.70, PolyPhen-2 0.52
- A117V (p.Ala117Val), rs747540614, ExAC rs747540614, gnomAD rs747540614, CADD 22.90, PolyPhen-2 0.34, Variant assessed as somatic; moderate impact.
- I118F (p.Ile118Phe), 1000Genomes rs55951658, ExAC rs55951658, TOPMed rs55951658, gnomAD rs55951658
- I118V (p.Ile118Val), rs55951658, UniProt VAR 011599, 1000Genomes rs55951658, ExAC rs55951658, CADD 0.00, PolyPhen-2 0.01, Benign, in allele CYP3A4*4
- S119T (p.Ser119Thr), ExAC rs772207069, gnomAD rs772207069, CADD 1.43, PolyPhen-2 0.00
- I120T (p.Ile120Thr), ESP rs147752776, ExAC rs147752776, TOPMed rs147752776, gnomAD rs147752776, CADD 6.33, PolyPhen-2 0.02
- A121D (p.Ala121Asp), ExAC rs779224668, TOPMed rs779224668, gnomAD rs779224668, CADD 22.70, PolyPhen-2 0.98
- A121G (p.Ala121Gly), ExAC rs779224668, TOPMed rs779224668, gnomAD rs779224668, CADD 24.20, PolyPhen-2 0.66
- E122D (p.Glu122Asp), ExAC rs755966203, gnomAD rs755966203, CADD 3.41, PolyPhen-2 0.01
- E122Q (p.Glu122Gln), TOPMed rs1815592672, gnomAD rs1815592672, CADD 0.32
- D123E (p.Asp123Glu), ExAC rs781017870, gnomAD rs781017870, CADD 19.10, PolyPhen-2 0.86
- D123Y (p.Asp123Tyr), ExAC rs752473076, gnomAD rs752473076
- D123N (p.Asp123Asn), rs781017870, []
- E124G (p.Glu124Gly), ExAC rs754927937, gnomAD rs754927937, CADD 23.60, PolyPhen-2 0.78
- E125D (p.Glu125Asp), rs1815592239, NCI-TCGA Cosmic COSV1003, TOPMed rs1815592239, ClinGen CA368373532, CADD 0.03, PolyPhen-2 0.00, Uncertain significance, not specified
- W126R (p.Trp126Arg), TOPMed rs1815592159, MetaLR 0.75, MetaSVM 0.79
- K127N (p.Lys127Asn), TOPMed rs1043569086, gnomAD rs1043569086, CADD 23.40, PolyPhen-2 1.00
- L129I (p.Leu129Ile), 1000Genomes rs551809042, ExAC rs551809042, TOPMed rs551809042, gnomAD rs551809042, CADD 0.00, PolyPhen-2 0.00
- R130* (p.Arg130Ter), ExAC rs778013004, TOPMed rs778013004, gnomAD rs778013004, CADD 29.80
- R130G (p.Arg130Gly), ExAC rs778013004, TOPMed rs778013004, gnomAD rs778013004, CADD 20.30
- R130P (p.Arg130Pro), 1000Genomes rs72552799, ESP rs72552799, ExAC rs72552799, TOPMed rs72552799, CADD 22.80
- R130Q (p.Arg130Gln), rs72552799, UniProt VAR 011600, 1000Genomes rs72552799, ESP rs72552799, CADD 23.00, PolyPhen-2 1.00, Benign, in allele CYP3A4*8
- S131L (p.Ser131Leu), NCI-TCGA Cosmic COSV6050, TOPMed rs1815591535, gnomAD rs1815591535, CADD 19.10, PolyPhen-2 0.37, Variant assessed as somatic; moderate impact.
- L132W (p.Leu132Trp), Ensembl rs867280165, MetaLR 0.59, MetaSVM 0.57
- S134C (p.Ser134Cys), ESP rs376124415, ExAC rs376124415, TOPMed rs376124415, gnomAD rs376124415, CADD 24.30, PolyPhen-2 0.62
- P135L (p.Pro135Leu), TOPMed rs1483230173, gnomAD rs1483230173, CADD 26.10, PolyPhen-2 1.00
- P135S (p.Pro135Ser), TOPMed rs914692305, MetaLR 0.66, MetaSVM 0.61
- T136A (p.Thr136Ala), ExAC rs748236460, TOPMed rs748236460, gnomAD rs748236460, CADD 8.19, PolyPhen-2 0.01
- T136I (p.Thr136Ile), ExAC rs776921395, gnomAD rs776921395, CADD 23.00, PolyPhen-2 0.97
- F137L (p.Phe137Leu), Ensembl rs2151560207, MetaLR 0.73, MetaSVM 0.73
- T138A (p.Thr138Ala), Ensembl rs1815590605
- T138I (p.Thr138Ile), TOPMed rs1815590508, MetaLR 0.71, MetaSVM 0.78
- S139G (p.Ser139Gly), ExAC rs761096029, gnomAD rs761096029, CADD 23.10, PolyPhen-2 0.09
- S139T (p.Ser139Thr), ExAC rs776078249, TOPMed rs776078249, gnomAD rs776078249, CADD 20.80, PolyPhen-2 0.05
- M145V (p.Met145Val), TOPMed rs1416086132, gnomAD rs1416086132, CADD 22.40, PolyPhen-2 0.59
- V146I (p.Val146Ile), TOPMed rs1815582859
- P147L (p.Pro147Leu), TOPMed rs1043942350, gnomAD rs1043942350, CADD 22.60, PolyPhen-2 0.38
- I148V (p.Ile148Val), 1000Genomes rs546282579, ExAC rs546282579, gnomAD rs546282579, CADD 16.50, PolyPhen-2 0.01
- A150S (p.Ala150Ser), ExAC rs746845845, TOPMed rs746845845, gnomAD rs746845845, CADD 1.22, PolyPhen-2 0.01
- Q151* (p.Gln151Ter), TOPMed rs1815582220, CADD 33.00
- Q151R (p.Gln151Arg), TOPMed rs1426332534
- V155A (p.Val155Ala), ExAC rs778287319, gnomAD rs778287319, AlphaMissense 0.93, MetaLR 0.34
- L160P (p.Leu160Pro), ExAC rs756730062, gnomAD rs756730062, CADD 23.40, PolyPhen-2 1.00
- R162Q (p.Arg162Gln), rs4986907, UniProt VAR 011601, 1000Genomes rs4986907, ESP rs4986907, CADD 0.34, PolyPhen-2 0.00, Benign, in allele CYP3A4*15
- R162W (p.Arg162Trp), 1000Genomes rs57409622, ESP rs57409622, ExAC rs57409622, TOPMed rs57409622, AlphaMissense 0.15, MetaLR 0.08
- E163K (p.Glu163Lys), TOPMed rs1815580701
- T166I (p.Thr166Ile), ExAC rs755800998, CADD 10.80, PolyPhen-2 0.04
- G167A (p.Gly167Ala), ExAC rs767982031, TOPMed rs767982031, gnomAD rs767982031, CADD 15.80, PolyPhen-2 0.48
- G167D (p.Gly167Asp), ExAC rs767982031, TOPMed rs767982031, gnomAD rs767982031, CADD 3.21, PolyPhen-2 0.04
- G167R (p.Gly167Arg), ExAC rs753163577, gnomAD rs753163577, CADD 17.90, PolyPhen-2 0.65
- K168N (p.Lys168Asn), 1000Genomes rs568779023, ExAC rs568779023, TOPMed rs568779023, gnomAD rs568779023, CADD 4.19, PolyPhen-2 0.02
- P169A (p.Pro169Ala), ExAC rs763047916, TOPMed rs763047916, gnomAD rs763047916, CADD 0.06, PolyPhen-2 0.00
- P169S (p.Pro169Ser), ExAC rs763047916, TOPMed rs763047916, gnomAD rs763047916, CADD 0.29, PolyPhen-2 0.01
- P169T (p.Pro169Thr), ExAC rs763047916, TOPMed rs763047916, gnomAD rs763047916, CADD 0.13, PolyPhen-2 0.04
- V170I (p.Val170Ile), rs72552798, UniProt VAR 011602, 1000Genomes rs72552798, ExAC rs72552798, AlphaMissense 0.20, MetaLR 0.08, Benign, in allele CYP3A4*9
- L172F (p.Leu172Phe), TOPMed rs1815579281, CADD 14.10, PolyPhen-2 0.27
- K173E (p.Lys173Glu), gnomAD rs1396501606, CADD 23.90, PolyPhen-2 0.98
- K173R (p.Lys173Arg), gnomAD rs1166594322, CADD 23.70, PolyPhen-2 0.71
Public CYP3A4 analysis runs
- CYP3A4 analysis run — CYP3A4 (753 variants) — completed 2026-08-18