PLCG2 (P16885) variants and mutations
PLCG2 (also known as P16885) is a human protein-coding gene encoding a 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 protein. It generates IP3 and diacylglycerol downstream of immune receptors, triggering intracellular calcium release and protein-kinase-C signaling in B cells and myeloid cells. Gain-of-function variants cause autoinflammatory and antibody-deficiency syndromes, while somatic mutations can mediate resistance to BTK inhibitors. This analysis covers 1,789 PLCG2 variants and mutations. Of these, 83% have computational variant effect predictions. Disease context includes PLCG2-associated antibody deficiency and immune dysregulation, autoinflammation-PLCG2-associated antibody deficiency-immune dysregulation, and familial cold autoinflammatory syndrome 3. Example PLCG2 variants include S2S, T3N, and T3P.
Variant analysis overview
- Gene: PLCG2
- Protein: P16885
- UniProt accession: P16885
- Organism: Homo sapiens
- Variants analyzed: 1789
- Variant scope: all variants
- Completed: 2026-08-21
Variant and mutation evidence
- Variant composition: 1,581 unspecified-consequence records; 6 frameshift variants; 84 synonymous variants; 107 missense variants; 7 stop-gained variants; 1 in-frame deletions; 3 splice-region variants; 1 substitution
- Prediction scores: 1,477 variants have prediction scores (83% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: PLCG2-associated antibody deficiency and immune dysregulation, autoinflammation-PLCG2-associated antibody deficiency-immune dysregulation, familial cold autoinflammatory syndrome 3, venous thromboembolism, Alzheimer disease, deep vein thrombosis, heart disorder, pulmonary embolism, cutaneous leishmaniasis, inflammatory bowel disease, Pulmonary Infarction, Thromboembolism.
Protein structure and variant hotspots
- Protein features: 7 domains; 5 post-translational modification sites.
- Structural context: 1,071 variants have structural context.
- PTM context: 2 variants overlap post-translational modification sites.
- Experimental data: 54 protein positions have experimental scores. Source: PLCG2 SH3 domain domainome 1.0.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable PLCG2 variants
Examples include S2S, T3N, T3P, T3A, T3S, T3I, T3T, T4A. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- S2S (p.Ser2Ser), gnomAD 16-81785995-C-G, CADD 2.59
- T3N (p.Thr3Asn), Ensembl rs1910952070
- T3P (p.Thr3Pro), rs1445255316, gnomAD 16-81785993-TC-T, CADD 17.50
- T3A (p.Thr3Ala), gnomAD 16-81785996-A-G, CADD 1.92, PolyPhen-2 0.00
- T3S (p.Thr3Ser), gnomAD 16-81785997-C-G, CADD 9.02, PolyPhen-2 0.01
- T3I (p.Thr3Ile), gnomAD 16-81785997-C-T, CADD 15.30, PolyPhen-2 0.01
- T3T (p.Thr3Thr), rs769990892, gnomAD 16-81785998-C-T, CADD 6.75
- T4A (p.Thr4Ala), ExAC rs780153793, gnomAD rs780153793, CADD 2.75, PolyPhen-2 0.00
- T4M (p.Thr4Met), rs199972098, ClinGen CA8193000, cosmic curated COSV63877, ClinVar RCV001421588, CADD 5.50, PolyPhen-2 0.00, Likely benign, Familial cold autoinflammatory syndrome 3
- T4R (p.Thr4Arg), 1000Genomes rs199972098, ESP rs199972098, ExAC rs199972098, TOPMed rs199972098, CADD 4.33, PolyPhen-2 0.00, Likely benign
- T4K (p.Thr4Lys), gnomAD 16-81786000-C-A, CADD 3.09, PolyPhen-2 0.00
- T4T (p.Thr4Thr), rs376949064, gnomAD 16-81786001-G-A, CADD 5.48
- V5F (p.Val5Phe), rs556174475, ClinGen CA8193002, ClinVar RCV002595355, ClinVar RCV003274253, CADD 8.23, PolyPhen-2 0.04, Uncertain significance, Inborn genetic diseases; Familial cold autoinflammatory syndrome 3
- V5A (p.Val5Ala), gnomAD 16-81786003-T-C, CADD 0.18, PolyPhen-2 0.00
- V5V (p.Val5Val), rs1567463011, gnomAD 16-81786004-C-T, CADD 2.83
- N6S (p.Asn6Ser), rs202002041, ClinGen CA8193003, ClinVar RCV003529076, 1000Genomes rs202002041, CADD 0.10, PolyPhen-2 0.00, Uncertain significance, Familial cold autoinflammatory syndrome 3
- N6N (p.Asn6Asn), rs1239813704, gnomAD 16-81786007-T-C, CADD 1.40
- V7L (p.Val7Leu), gnomAD 16-81786008-G-C, CADD 9.54, PolyPhen-2 0.00
- D8E (p.Asp8Glu), ExAC rs772051902, gnomAD rs772051902, CADD 4.49, PolyPhen-2 0.00
- D8H (p.Asp8His), gnomAD rs9936371
- D8V (p.Asp8Val), rs2507343685, ClinGen CA396895305, ClinVar RCV003644245, Uncertain significance, Familial cold autoinflammatory syndrome 3
- D8Y (p.Asp8Tyr), gnomAD rs9936371
- D8N (p.Asp8Asn), gnomAD 16-81786011-G-A, CADD 17.50, PolyPhen-2 0.01
- S9Y (p.Ser9Tyr), TOPMed rs1381077690, gnomAD rs1381077690, CADD 14.90, PolyPhen-2 0.02, Uncertain significance, Inborn genetic diseases
- S9C (p.Ser9Cys), gnomAD 16-81786015-C-G, CADD 15.40, PolyPhen-2 0.04
- S9F (p.Ser9Phe), gnomAD 16-81786015-C-T, CADD 15.90, PolyPhen-2 0.01
- S9S (p.Ser9Ser), rs772778136, gnomAD 16-81786016-C-T, CADD 5.98
- L10P (p.Leu10Pro), gnomAD rs1234733197, CADD 25.60, PolyPhen-2 0.90
- L10V (p.Leu10Val), ExAC rs766002121, gnomAD rs766002121, CADD 22.50, PolyPhen-2 0.29
- L10F (p.Leu10Phe), gnomAD 16-81786017-C-T, CADD 24.10, PolyPhen-2 0.74
- L10R (p.Leu10Arg), gnomAD 16-81786018-T-G, CADD 25.30, PolyPhen-2 0.85
- A11E (p.Ala11Glu), rs753458249, ClinGen CA396895321, ClinVar RCV002026153, ClinVar RCV005692455, CADD 20.70, PolyPhen-2 0.01, Uncertain significance, Inborn genetic diseases; Familial cold autoinflammatory syndrome 3
- A11V (p.Ala11Val), rs753458249, ClinGen CA8193008, cosmic curated COSV63877, ClinVar RCV001952298, CADD 21.10, PolyPhen-2 0.01, Uncertain significance, Familial cold autoinflammatory syndrome 3; Autoinflammation-PLCG2-associated ant
- A11G (p.Ala11Gly), gnomAD 16-81786021-C-G, CADD 20.60, PolyPhen-2 0.01
- A11A (p.Ala11Ala), gnomAD 16-81786022-G-C, CADD 0.43
- E12D (p.Glu12Asp), ExAC rs763370826, gnomAD rs763370826, CADD 3.66, PolyPhen-2 0.02
- E12G (p.Glu12Gly), gnomAD 16-81786024-A-G, CADD 28.00, PolyPhen-2 0.63
- E12E (p.Glu12Glu), rs763370826, gnomAD 16-81786025-A-G, CADD 1.82
- Y13N (p.Tyr13Asn), TOPMed rs1910954092
- Y13S (p.Tyr13Ser), gnomAD rs1261993965, CADD 24.20, PolyPhen-2 0.94
- Y13H (p.Tyr13His), gnomAD 16-81786026-T-C, CADD 23.60, PolyPhen-2 0.98
- K15R (p.Lys15Arg), TOPMed rs1050133080
- K15T (p.Lys15Thr), TOPMed rs1050133080, CADD 24.20, PolyPhen-2 0.96
- K15K (p.Lys15Lys), rs1173675944, gnomAD 16-81786034-G-A, CADD 10.50
- S16G (p.Ser16Gly), rs764524085, ClinGen CA8193010, ClinVar RCV003644144, ExAC rs764524085, CADD 23.30, PolyPhen-2 0.40, Uncertain significance, Familial cold autoinflammatory syndrome 3
- S16R (p.Ser16Arg), rs752018966, ClinGen CA8193011, ClinVar RCV001507352, ClinVar RCV001882540, CADD 12.70, PolyPhen-2 0.06, Uncertain significance, Autoinflammation-PLCG2-associated antibody deficiency-immune dysregulation; Fami
- Q17H (p.Gln17His), cosmic curated COSV10084, Ensembl rs750388097, CADD 24.00, PolyPhen-2 0.59
- Q17L (p.Gln17Leu), rs757826017, ClinGen CA396895363, ClinVar RCV001904055, ExAC rs757826017, AlphaMissense 0.15, MetaLR 0.16, Uncertain significance, Familial cold autoinflammatory syndrome 3
- Q17P (p.Gln17Pro), ExAC rs757826017, TOPMed rs757826017, gnomAD rs757826017, AlphaMissense 0.15, MetaLR 0.16, Uncertain significance
- Q17R (p.Gln17Arg), rs757826017, ClinGen CA396895362, ClinVar RCV002766892, ClinVar RCV005692508, AlphaMissense 0.15, MetaLR 0.16, Uncertain significance, Inborn genetic diseases; Familial cold autoinflammatory syndrome 3
- Q17E (p.Gln17Glu), gnomAD 16-81786038-C-G, CADD 18.10, PolyPhen-2 0.12
- I18L (p.Ile18Leu), gnomAD 16-81786041-A-C, CADD 23.50, PolyPhen-2 0.95
- I18N (p.Ile18Asn), gnomAD 16-81786042-T-A, CADD 29.90, PolyPhen-2 1.00
- I18I (p.Ile18Ile), rs1486559662, gnomAD 16-81786043-C-T, CADD 12.10
- K19K (p.Lys19Lys), rs369542354, gnomAD 16-81786046-G-A, CADD 10.60
- R20K (p.Arg20Lys), rs1910955135, ClinGen CA396895382, ClinVar RCV001091767, Ensembl rs1910955135, CADD 25.30, PolyPhen-2 0.82, Uncertain significance, not provided
- R20T (p.Arg20Thr), Ensembl rs1910955135, CADD 28.70, PolyPhen-2 0.91, Uncertain significance
- R20S (p.Arg20Ser), gnomAD 16-81786044-AAG-A, CADD 29.90
- A21S (p.Ala21Ser), rs1248111391, ClinGen CA396895389, cosmic curated COSV10084, ClinVar RCV002031022, CADD 18.60, PolyPhen-2 0.02, Uncertain significance, Familial cold autoinflammatory syndrome 3
- A21T (p.Ala21Thr), cosmic curated COSV63868, TOPMed rs1248111391, gnomAD rs1248111391, CADD 21.30, PolyPhen-2 0.00, Uncertain significance, Familial cold autoinflammatory syndrome 3
- A21V (p.Ala21Val), rs2507343856, ClinGen CA396895392, ClinVar RCV004547363, Uncertain significance, Autoinflammation-PLCG2-associated antibody deficiency-immune dysregulation
- A21A (p.Ala21Ala), rs374235189, gnomAD 16-81786052-C-T, CADD 8.68
- L22M (p.Leu22Met), rs1423487027, ClinGen CA396895393, ClinVar RCV001647347, TOPMed rs1423487027, AlphaMissense 0.24, MetaLR 0.45, Uncertain significance, Autoinflammation-PLCG2-associated antibody deficiency-immune dysregulation
- L22V (p.Leu22Val), TOPMed rs1423487027, gnomAD rs1423487027, AlphaMissense 0.24, MetaLR 0.45, Uncertain significance
- L22L (p.Leu22Leu), rs1423487027, gnomAD 16-81786053-C-T, AlphaMissense 0.24, MetaLR 0.45
- E23D (p.Glu23Asp), gnomAD rs1365609689, CADD 26.20, PolyPhen-2 0.88
- E23H (p.Glu23His), rs780660956, gnomAD 16-81786055-GGAGC, CADD 32.00
- L24L (p.Leu24Leu), gnomAD 16-81786059-C-T, CADD 11.00
- L24V (p.Leu24Val), gnomAD 16-81786059-C-G, CADD 20.30, PolyPhen-2 0.29
- G25R (p.Gly25Arg), gnomAD 16-81786062-G-A, CADD 31.00, PolyPhen-2 1.00
- G25G (p.Gly25Gly), gnomAD 16-81786064-G-T, CADD 8.80
- T26A (p.Thr26Ala), gnomAD rs1158633876, CADD 23.20, PolyPhen-2 0.00, Uncertain significance, Familial cold autoinflammatory syndrome 3; not specified
- T26M (p.Thr26Met), rs189301790, ClinGen CA8193017, cosmic curated COSV63867, ClinVar RCV000757665, CADD 22.30, PolyPhen-2 0.00, Conflicting interpretations, Familial cold autoinflammatory syndrome 3; not provided; Autoinflammation-PLCG2
- T26K (p.Thr26Lys), gnomAD 16-81786066-C-A, CADD 23.30, PolyPhen-2 0.03
- T26T (p.Thr26Thr), rs749437141, gnomAD 16-81786067-G-A, CADD 3.45
- V27V (p.Val27Val), rs1311473662, gnomAD 16-81786070-G-A, CADD 8.96
- M28L (p.Met28Leu), rs61749044, ClinGen CA8193019, ClinVar RCV000551682, ClinVar RCV001700399, CADD 24.30, PolyPhen-2 0.81, Benign/Likely benign, not specified; Familial cold autoinflammatory syndrome 3; not provided
- M28I (p.Met28Ile), gnomAD 16-81786073-G-C, CADD 25.00, PolyPhen-2 0.91
- T29S (p.Thr29Ser), ExAC rs778662619, CADD 25.50, PolyPhen-2 0.98
- V30L (p.Val30Leu), rs372502550, ClinGen CA8193021, ClinVar RCV001425620, ClinVar RCV002555515, CADD 22.10, PolyPhen-2 0.00, Conflicting interpretations, Inborn genetic diseases; Familial cold autoinflammatory syndrome 3
- V30M (p.Val30Met), ESP rs372502550, ExAC rs372502550, TOPMed rs372502550, gnomAD rs372502550, CADD 23.30, PolyPhen-2 0.34, Likely benign
- V30G (p.Val30Gly), gnomAD 16-81786078-T-G, CADD 28.40, PolyPhen-2 0.58
- V30V (p.Val30Val), gnomAD 16-81786079-G-T, CADD 8.91
- F31L (p.Phe31Leu), TOPMed rs1910956931, CADD 23.90, PolyPhen-2 0.14
- F31F (p.Phe31Phe), rs1910956931, gnomAD 16-81786082-C-T, CADD 13.20
- S32G (p.Ser32Gly), gnomAD rs1314680723, AlphaMissense 0.10, MetaLR 0.15, Uncertain significance, Familial cold autoinflammatory syndrome 3
- S32N (p.Ser32Asn), rs1238219389, ClinGen CA396895456, ClinVar RCV003326946, CADD 22.10, PolyPhen-2 0.01, Uncertain significance, not provided
- S32R (p.Ser32Arg), rs1314680723, ClinGen CA396895453, ClinVar RCV003408438, AlphaMissense 0.10, MetaLR 0.15, Uncertain significance, PLCG2-related disorder
- S32T (p.Ser32Thr), gnomAD rs1238219389, CADD 22.20, PolyPhen-2 0.12
- S32I (p.Ser32Ile), gnomAD 16-81786084-G-T, CADD 23.90, PolyPhen-2 0.50
- S32S (p.Ser32Ser), gnomAD 16-81786085-C-T, CADD 10.20
- F33L (p.Phe33Leu), rs773040139, ClinGen CA8193023, cosmic curated COSV63868, ClinVar RCV001300282, CADD 20.40, PolyPhen-2 0.00, Conflicting interpretations, Familial cold autoinflammatory syndrome 3; not provided
- F33F (p.Phe33Phe), rs760188007, gnomAD 16-81786088-C-T, CADD 10.40
- R34C (p.Arg34Cys), cosmic curated COSV63867, ExAC rs770382676, TOPMed rs770382676, gnomAD rs770382676, CADD 28.70, PolyPhen-2 0.51
- R34H (p.Arg34His), rs537204469, ClinGen CA8193026, ClinVar RCV003529320, 1000Genomes rs537204469, CADD 25.50, PolyPhen-2 0.42, Uncertain significance, Familial cold autoinflammatory syndrome 3
- R34L (p.Arg34Leu), 1000Genomes rs537204469, ExAC rs537204469, gnomAD rs537204469, CADD 24.90, PolyPhen-2 0.09, Uncertain significance
- R34S (p.Arg34Ser), gnomAD 16-81786089-C-A, CADD 22.90, PolyPhen-2 0.09
- R34P (p.Arg34Pro), gnomAD 16-81786090-G-C, CADD 23.80, PolyPhen-2 0.31
- R34R (p.Arg34Arg), rs1319448998, gnomAD 16-81786091-C-G, CADD 9.28
- K35R (p.Lys35Arg), ExAC rs759241889, gnomAD rs759241889, CADD 22.20, PolyPhen-2 0.01
- K35K (p.Lys35Lys), rs1910957870, gnomAD 16-81786094-G-A, CADD 10.10
- K35N (p.Lys35Asn), gnomAD 16-81786094-G-T, CADD 25.00, PolyPhen-2 0.56
- S36C (p.Ser36Cys), rs2507344050, ClinGen CA396895483, ClinVar RCV003873273, CADD 18.80, PolyPhen-2 0.00, Uncertain significance, Familial cold autoinflammatory syndrome 3
- S36P (p.Ser36Pro), gnomAD 16-81786095-T-C, CADD 22.60, PolyPhen-2 0.03
- T37I (p.Thr37Ile), 1000Genomes rs147349332, ESP rs147349332, ExAC rs147349332, TOPMed rs147349332, Uncertain significance, Familial cold autoinflammatory syndrome 3
- T37N (p.Thr37Asn), rs147349332, ClinGen CA8193029, ClinVar RCV000887224, ClinVar RCV002495368, CADD 17.40, PolyPhen-2 0.00, Likely benign, Familial cold autoinflammatory syndrome 3; Autoinflammation-PLCG2-associated ant
- T37P (p.Thr37Pro), ExAC rs765042969, gnomAD rs765042969
- T37S (p.Thr37Ser), ExAC rs765042969, gnomAD rs765042969, CADD 21.00, PolyPhen-2 0.00
- T37T (p.Thr37Thr), rs762280295, gnomAD 16-81786100-C-G, CADD 2.68
- P38A (p.Pro38Ala), TOPMed rs1910958396
- P38R (p.Pro38Arg), TOPMed rs1178533195, gnomAD rs1178533195, CADD 22.80, PolyPhen-2 0.04
- P38S (p.Pro38Ser), gnomAD 16-81786101-C-T, CADD 21.10, PolyPhen-2 0.00
- P38L (p.Pro38Leu), gnomAD 16-81786102-C-T, CADD 21.60, PolyPhen-2 0.00
- P38H (p.Pro38His), gnomAD 16-81786102-C-A, CADD 22.90, PolyPhen-2 0.12
- P38P (p.Pro38Pro), rs750924322, gnomAD 16-81786103-C-T, CADD 3.04
- E39R (p.Glu39Arg), gnomAD 16-81786098-A-AC, CADD 26.30
- E39Q (p.Glu39Gln), gnomAD 16-81786104-G-C, CADD 27.90, PolyPhen-2 0.87
- E39E (p.Glu39Glu), rs1437145496, gnomAD 16-81786106-G-A, CADD 10.20
- R40Q (p.Arg40Gln), gnomAD rs1347311494, CADD 32.00
- R40W (p.Arg40Trp), gnomAD 16-81786107-C-T, CADD 28.00, PolyPhen-2 1.00
- R40R (p.Arg40Arg), rs1910959009, gnomAD 16-81786109-G-C, CADD 7.60
- R41K (p.Arg41Lys), gnomAD 16-81786111-G-A, CADD 22.90, PolyPhen-2 0.29
- R41S (p.Arg41Ser), gnomAD 16-81786112-A-T, CADD 24.00, PolyPhen-2 0.39
- T42A (p.Thr42Ala), Ensembl rs1910959103
- T42N (p.Thr42Asn), gnomAD 16-81786114-C-A, CADD 25.50, PolyPhen-2 0.99
- T42T (p.Thr42Thr), rs753972799, gnomAD 16-81786115-C-G, CADD 1.12
- V43F (p.Val43Phe), rs370352962, ClinGen CA396895521, ClinVar RCV000804933, 1000Genomes rs370352962, AlphaMissense 0.71, MetaLR 0.06, Uncertain significance, Familial cold autoinflammatory syndrome 3
- V43I (p.Val43Ile), rs370352962, ClinGen CA8193036, cosmic curated COSV10084, ClinVar RCV001224944, AlphaMissense 0.71, MetaLR 0.06, Uncertain significance, Inborn genetic diseases; Autoinflammation-PLCG2-associated antibody deficiency-i
- V43A (p.Val43Ala), gnomAD 16-81786117-T-C, CADD 24.70, PolyPhen-2 0.20
- V43V (p.Val43Val), rs779108574, gnomAD 16-81786118-C-G, CADD 8.55
- Q44H (p.Gln44His), gnomAD 16-81786121-G-C, CADD 25.40, PolyPhen-2 0.99
- Q44Q (p.Gln44Gln), rs1910959593, gnomAD 16-81786121-G-A, CADD 9.96
- V45L (p.Val45Leu), rs368137889, ClinGen CA8193038, ClinVar RCV003643937, ESP rs368137889, CADD 24.40, PolyPhen-2 0.98, Uncertain significance, Familial cold autoinflammatory syndrome 3
- V45M (p.Val45Met), rs368137889, ClinGen CA396895533, ClinVar RCV001350292, ClinVar RCV004960842, CADD 27.10, PolyPhen-2 1.00, Uncertain significance, Inborn genetic diseases; Familial cold autoinflammatory syndrome 3
- V45A (p.Val45Ala), gnomAD 16-81786123-T-C, CADD 29.00, PolyPhen-2 0.98
- V45V (p.Val45Val), gnomAD 16-81786124-G-T, CADD 10.80
- I46V (p.Ile46Val), gnomAD 16-81786125-A-G, CADD 23.70, PolyPhen-2 0.95
- I46I (p.Ile46Ile), rs1023636697, gnomAD 16-81786127-C-A, CADD 12.70
- M47L (p.Met47Leu), ExAC rs758215832, gnomAD rs758215832, CADD 20.70, PolyPhen-2 0.01
- M47T (p.Met47Thr), ExAC rs777730567, gnomAD rs777730567, CADD 22.80, PolyPhen-2 0.00
- M47V (p.Met47Val), gnomAD 16-81786128-A-G, CADD 22.50, PolyPhen-2 0.04
- E48K (p.Glu48Lys), ExAC rs746891285, TOPMed rs746891285, gnomAD rs746891285, CADD 32.00, PolyPhen-2 0.98
- E48Q (p.Glu48Gln), ExAC rs746891285, TOPMed rs746891285, gnomAD rs746891285, CADD 29.60
- E48E (p.Glu48Glu), gnomAD 16-81786133-G-A, CADD 10.20
- T49M (p.Thr49Met), rs1231997442, ClinGen CA396895564, cosmic curated COSV63876, ClinVar RCV003333482, CADD 26.50, PolyPhen-2 1.00, Uncertain significance, Familial cold autoinflammatory syndrome 3; Autoinflammation-PLCG2-associated ant
- T49S (p.Thr49Ser), TOPMed rs1210167796, Uncertain significance, Familial cold autoinflammatory syndrome 3; Autoinflammation-PLCG2-associated ant
- T49R (p.Thr49Arg), gnomAD 16-81786135-C-G, CADD 26.30, PolyPhen-2 1.00
- T49T (p.Thr49Thr), rs969768555, gnomAD 16-81786136-G-A, CADD 0.71
- R50Q (p.Arg50Gln), rs370242901, ClinGen CA8193044, ClinVar RCV003643384, ExAC rs370242901, CADD 26.40, PolyPhen-2 0.65, Uncertain significance, Familial cold autoinflammatory syndrome 3
- R50W (p.Arg50Trp), ExAC rs770951220, TOPMed rs770951220, gnomAD rs770951220, CADD 22.90, PolyPhen-2 0.89, Uncertain significance, Familial cold autoinflammatory syndrome 3; Autoinflammation-PLCG2-associated ant
- R50R (p.Arg50Arg), rs770951220, gnomAD 16-81786137-C-A, CADD 7.61
- R50L (p.Arg50Leu), gnomAD 16-81786138-G-T, CADD 24.10, PolyPhen-2 0.19
- R50P (p.Arg50Pro), gnomAD 16-81786138-G-C, CADD 27.20, PolyPhen-2 0.83
- Q51H (p.Gln51His), rs775303395, ClinGen CA8193046, ClinVar RCV003015566, ExAC rs775303395, CADD 24.60, PolyPhen-2 0.99, Uncertain significance, Familial cold autoinflammatory syndrome 3
- V52G (p.Val52Gly), cosmic curated COSV63869, ExAC rs762228969, gnomAD rs762228969, CADD 32.00, PolyPhen-2 1.00
- A53D (p.Ala53Asp), TOPMed rs1253716514, gnomAD rs1253716514
- A53T (p.Ala53Thr), rs532678378, ClinGen CA285164737, ClinVar RCV001091768, ClinVar RCV001340293, CADD 25.50, PolyPhen-2 1.00, Uncertain significance, not provided; Familial cold autoinflammatory syndrome 3
- A53V (p.Ala53Val), cosmic curated COSV63878, TOPMed rs1253716514, gnomAD rs1253716514, CADD 23.40, PolyPhen-2 0.99, Uncertain significance, Familial cold autoinflammatory syndrome 3
- A53A (p.Ala53Ala), rs767741418, gnomAD 16-81786148-C-T, CADD 10.50
- S55R (p.Ser55Arg), ExAC rs773671139, TOPMed rs773671139, gnomAD rs773671139, CADD 22.80, PolyPhen-2 0.46
- S55T (p.Ser55Thr), gnomAD 16-81786153-G-C, CADD 22.40, PolyPhen-2 0.01
- S55S (p.Ser55Ser), gnomAD 16-81786154-C-T, CADD 12.70
- K56Q (p.Lys56Gln), gnomAD 16-81786155-A-C, CADD 26.60, PolyPhen-2 0.48
- K56K (p.Lys56Lys), rs1424879450, gnomAD 16-81786157-G-A, CADD 11.90
- T57N (p.Thr57Asn), gnomAD rs1429527089, CADD 23.70, PolyPhen-2 0.96
- T57P (p.Thr57Pro), Ensembl rs1597317576
- T57S (p.Thr57Ser), gnomAD rs1429527089, CADD 22.40, PolyPhen-2 0.43
- T57A (p.Thr57Ala), gnomAD 16-81786158-A-G, CADD 24.70, PolyPhen-2 0.83
- T57T (p.Thr57Thr), gnomAD 16-81786160-C-A, CADD 1.05
- A58T (p.Ala58Thr), cosmic curated COSV63868, ExAC rs766974268, TOPMed rs766974268, gnomAD rs766974268, CADD 22.90, PolyPhen-2 0.34
- A58V (p.Ala58Val), rs753845661, ClinGen CA8193052, ClinVar RCV000650043, ExAC rs753845661, CADD 22.50, PolyPhen-2 0.02, Uncertain significance, Familial cold autoinflammatory syndrome 3
- A58S (p.Ala58Ser), gnomAD 16-81786161-G-T, CADD 22.80, PolyPhen-2 0.31
- p.Ala58 Asp59insArgGlyLeuLeuTer, gnomAD 16-81786163-T-TCG, CADD 34.00
- A58A (p.Ala58Ala), rs1143685, gnomAD 16-81786163-T-C, CADD 2.85
- D59E (p.Asp59Glu), TOPMed rs1396122255, gnomAD rs1396122255, CADD 23.10, PolyPhen-2 0.66
- D59R (p.Asp59Arg), gnomAD 16-81786163-T-TCG, CADD 34.00
- D59N (p.Asp59Asn), gnomAD 16-81786164-G-A, CADD 24.00, PolyPhen-2 0.08
- D59D (p.Asp59Asp), gnomAD 16-81786166-C-T, CADD 11.30
- K60T (p.Lys60Thr), gnomAD 16-81786168-A-C, CADD 25.90, PolyPhen-2 0.96
- I61M (p.Ile61Met), rs553657822, ClinGen CA396895641, ClinVar RCV001902960, 1000Genomes rs553657822, CADD 13.30, PolyPhen-2 0.86, Uncertain significance, Familial cold autoinflammatory syndrome 3
Public PLCG2 analysis runs
- PLCG2 analysis run — PLCG2 (1,789 variants) — completed 2026-08-21