MCM3 (P25205) variants and mutations
MCM3 (also known as P25205) is a human protein-coding gene encoding a DNA replication licensing factor protein. It contributes to the MCM2-7 replicative helicase that licenses replication origins and separates DNA strands during S phase. Disruption of helicase control can promote replication stress and genome instability, while high expression commonly marks proliferating tumor cells. This analysis covers 1,199 MCM3 variants and mutations. Of these, 70% have computational variant effect predictions. Disease context includes neurodegenerative disease, Meier-Gorlin syndrome, and hepatocellular carcinoma. Example MCM3 variants include M1?, A2E, and A2V.
Variant analysis overview
- Gene: MCM3
- Protein: P25205
- UniProt accession: P25205
- Organism: Homo sapiens
- Variants analyzed: 1199
- Variant scope: all variants
- Completed: 2026-08-20
Variant and mutation evidence
- Variant composition: 972 unspecified-consequence records; 48 synonymous variants; 143 missense variants; 15 frameshift variants; 13 stop-gained variants; 2 in-frame insertions; 2 in-frame deletions; 2 splice-region variants; 2 substitution
- Prediction scores: 845 variants have prediction scores (70% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: neurodegenerative disease, Meier-Gorlin syndrome, hepatocellular carcinoma, cancer, neoplasm, breast carcinoma, breast cancer, melanoma, cervical carcinoma, cervical cancer, colorectal carcinoma, pancreatic adenocarcinoma.
Protein structure and variant hotspots
- Protein features: 1 domains; 7 binding sites; 18 post-translational modification sites.
- Structural context: 497 variants have structural context.
- PTM context: 34 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable MCM3 variants
Examples include M1?, A2E, A2V, G3D, G3S, V5A, V5E, V5M. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- M1?, cosmic curated COSV10955, NCI-TCGA Cosmic COSV5771, cosmic curated COSV57718, Variant assessed as somatic; moderate impact.
- A2E (p.Ala2Glu), ExAC rs754556530, TOPMed rs754556530, gnomAD rs754556530, CADD 24.40, PolyPhen-2 0.98
- A2V (p.Ala2Val), rs754556530, NCI-TCGA Cosmic COSV5771, cosmic curated COSV57718, ExAC rs754556530, CADD 25.30, PolyPhen-2 0.94, Variant assessed as somatic; moderate impact.
- G3D (p.Gly3Asp), Ensembl rs1766488413, CADD 19.50, PolyPhen-2 0.03
- G3S (p.Gly3Ser), TOPMed rs1469528432, gnomAD rs1469528432
- V5A (p.Val5Ala), TOPMed rs1766487276
- V5E (p.Val5Glu), TOPMed rs1766487276, CADD 22.50, PolyPhen-2 0.00
- V5M (p.Val5Met), ESP rs199986979, ExAC rs199986979, TOPMed rs199986979, gnomAD rs199986979, CADD 21.90, PolyPhen-2 0.06
- V6G (p.Val6Gly), ExAC rs749985199, gnomAD rs749985199, CADD 23.90, PolyPhen-2 0.03
- V6L (p.Val6Leu), TOPMed rs959712619, gnomAD rs959712619, cosmic curated COSV57716, CADD 19.10, PolyPhen-2 0.01
- L7F (p.Leu7Phe), cosmic curated COSV10456, CADD 14.30
- D9N (p.Asp9Asn), 1000Genomes rs201824068, ESP rs201824068, ExAC rs201824068, TOPMed rs201824068, CADD 28.50, PolyPhen-2 0.91
- D9Y (p.Asp9Tyr), 1000Genomes rs201824068, ESP rs201824068, ExAC rs201824068, TOPMed rs201824068, CADD 28.90, PolyPhen-2 0.99
- E11D (p.Glu11Asp), gnomAD rs1443436101, CADD 21.00, PolyPhen-2 0.04
- E11V (p.Glu11Val), TOPMed rs1348268831, gnomAD rs1348268831, CADD 25.90
- L12F (p.Leu12Phe), cosmic curated COSV10456, CADD 5.51
- R13K (p.Arg13Lys), cosmic curated COSV10506
- R13W (p.Arg13Trp), ExAC rs753057016, TOPMed rs753057016, gnomAD rs753057016, CADD 31.00, PolyPhen-2 0.95
- E14* (p.Glu14Ter), cosmic curated COSV10000, CADD 35.00
- A15S (p.Ala15Ser), TOPMed rs1766484462
- Q16E (p.Gln16Glu), gnomAD rs1325681028, CADD 21.00, PolyPhen-2 0.03
- Q16R (p.Gln16Arg), gnomAD rs1456679007, CADD 24.10, PolyPhen-2 0.49
- R17C (p.Arg17Cys), cosmic curated COSV10456, CADD 22.50
- D18G (p.Asp18Gly), Ensembl rs1766483123, CADD 24.40, PolyPhen-2 0.25
- D18N (p.Asp18Asn), ExAC rs768000563, gnomAD rs768000563, CADD 23.70, PolyPhen-2 0.26
- Y19D (p.Tyr19Asp), ExAC rs759768975, gnomAD rs759768975
- L20Q (p.Leu20Gln), TOPMed rs1408767850
- D21N (p.Asp21Asn), ExAC rs774463729, gnomAD rs774463729
- F22L (p.Phe22Leu), ExAC rs771235249, gnomAD rs771235249, CADD 33.00, PolyPhen-2 0.98
- D24E (p.Asp24Glu), ExAC rs773409479, gnomAD rs773409479, CADD 22.50, PolyPhen-2 0.85
- D25V (p.Asp25Val), TOPMed rs1766479926, CADD 32.00, PolyPhen-2 0.90
- D28Y (p.Asp28Tyr), TOPMed rs1766327569
- Q29R (p.Gln29Arg), TOPMed rs1407200579, gnomAD rs1407200579, CADD 23.30
- G30* (p.Gly30Ter), TOPMed rs1373690900
- G30E (p.Gly30Glu), ExAC rs775410933, TOPMed rs775410933, gnomAD rs775410933, CADD 27.80, PolyPhen-2 0.90
- G30R (p.Gly30Arg), TOPMed rs1373690900
- G30V (p.Gly30Val), ExAC rs775410933, TOPMed rs775410933, gnomAD rs775410933, CADD 25.90
- I31M (p.Ile31Met), gnomAD rs1485953818, CADD 23.00, PolyPhen-2 0.36
- I31T (p.Ile31Thr), Ensembl rs2128285007
- I31V (p.Ile31Val), TOPMed rs1766325640, CADD 16.80, PolyPhen-2 0.00
- Q33H (p.Gln33His), 1000Genomes rs560730032, ExAC rs560730032, gnomAD rs560730032, CADD 20.20
- K35R (p.Lys35Arg), ExAC rs745541606, TOPMed rs745541606, gnomAD rs745541606, CADD 23.40, PolyPhen-2 0.02, Uncertain significance, not specified
- V36G (p.Val36Gly), TOPMed rs1313677046, CADD 32.00, PolyPhen-2 0.87
- R37L (p.Arg37Leu), ESP rs150433204, TOPMed rs150433204, gnomAD rs150433204, CADD 23.10, PolyPhen-2 0.12
- R37Q (p.Arg37Gln), ESP rs150433204, TOPMed rs150433204, gnomAD rs150433204, CADD 23.10, PolyPhen-2 0.01, Uncertain significance, not specified
- R37W (p.Arg37Trp), ExAC rs778529414, gnomAD rs778529414, CADD 26.80, PolyPhen-2 0.68
- E38V (p.Glu38Val), ExAC rs756855196, gnomAD rs756855196, CADD 24.00, PolyPhen-2 0.04
- I40M (p.Ile40Met), gnomAD rs1766321355, CADD 18.10, PolyPhen-2 0.39
- S41N (p.Ser41Asn), gnomAD rs1295485082, CADD 17.70, PolyPhen-2 0.00
- D42G (p.Asp42Gly), TOPMed rs1766320801, gnomAD rs1766320801, CADD 24.10, Uncertain significance, not specified
- N43S (p.Asn43Ser), ExAC rs748860335, gnomAD rs748860335, CADD 22.40, PolyPhen-2 0.04
- Q44R (p.Gln44Arg), Ensembl rs1562402019, CADD 21.70, PolyPhen-2 0.00
- Y45C (p.Tyr45Cys), TOPMed rs1766319171, CADD 22.70, PolyPhen-2 0.00
- Y45H (p.Tyr45His), TOPMed rs1327072696, gnomAD rs1327072696, CADD 22.40, PolyPhen-2 0.00
- R46L (p.Arg46Leu), ExAC rs781756081, gnomAD rs781756081, CADD 31.00, PolyPhen-2 1.00
- R46W (p.Arg46Trp), TOPMed rs1242946313, gnomAD rs1242946313, CADD 33.00, PolyPhen-2 1.00
- I48N (p.Ile48Asn), TOPMed rs1299870343, gnomAD rs1299870343, CADD 31.00, PolyPhen-2 0.71
- I48T (p.Ile48Thr), TOPMed rs1299870343, gnomAD rs1299870343, CADD 24.90, PolyPhen-2 0.55
- N50I (p.Asn50Ile), ExAC rs755575995, TOPMed rs755575995, gnomAD rs755575995, Uncertain significance
- N50S (p.Asn50Ser), rs755575995, ClinGen CA3855274, ClinVar RCV004072680, ExAC rs755575995, CADD 18.90, PolyPhen-2 0.03, Uncertain significance, not specified
- R55C (p.Arg55Cys), gnomAD rs1562401884, CADD 33.00, PolyPhen-2 1.00
- R55L (p.Arg55Leu), ExAC rs750663816, TOPMed rs750663816, gnomAD rs750663816, CADD 31.00, PolyPhen-2 0.99
- R56W (p.Arg56Trp), gnomAD rs1421302254, CADD 32.00, PolyPhen-2 0.88
- N58K (p.Asn58Lys), ESP rs376784894, ExAC rs376784894, TOPMed rs376784894, gnomAD rs376784894, CADD 22.30, PolyPhen-2 0.70, Uncertain significance, not specified
- E59K (p.Glu59Lys), TOPMed rs1475520607, gnomAD rs1475520607, CADD 22.90, PolyPhen-2 0.11
- K60* (p.Lys60Ter), TOPMed rs1766311048
- K60T (p.Lys60Thr), TOPMed rs1008282861, CADD 23.00, PolyPhen-2 0.01
- R61S (p.Arg61Ser), ExAC rs746776432, TOPMed rs746776432, gnomAD rs746776432
- A62E (p.Ala62Glu), cosmic curated COSV10000, CADD 14.90
- R64G (p.Arg64Gly), ExAC rs771936489, gnomAD rs771936489, CADD 22.00, PolyPhen-2 0.00
- R64W (p.Arg64Trp), ExAC rs771936489, gnomAD rs771936489, CADD 33.00, PolyPhen-2 0.46
- L65M (p.Leu65Met), cosmic curated COSV57719
- L65V (p.Leu65Val), gnomAD rs1158156648
- N67K (p.Asn67Lys), TOPMed rs914617526, gnomAD rs914617526, CADD 18.50, PolyPhen-2 0.01
- N67S (p.Asn67Ser), ExAC rs759376935, gnomAD rs759376935
- N67T (p.Asn67Thr), ExAC rs759376935, gnomAD rs759376935, CADD 8.26, PolyPhen-2 0.01
- N68K (p.Asn68Lys), cosmic curated COSV57716
- A69G (p.Ala69Gly), TOPMed rs1477822068, gnomAD rs1477822068, CADD 24.70, PolyPhen-2 0.03
- F70I (p.Phe70Ile), TOPMed rs1177768756
- F70L (p.Phe70Leu), TOPMed rs1177768756, CADD 23.50, PolyPhen-2 0.02
- F70V (p.Phe70Val), TOPMed rs1177768756
- E71* (p.Glu71Ter), ExAC rs774356447, TOPMed rs774356447, gnomAD rs774356447, CADD 41.00
- L73Q (p.Leu73Gln), rs1254385710, ClinGen CA364450752, ClinVar RCV004169265, gnomAD rs1254385710, CADD 23.20, PolyPhen-2 0.01, Uncertain significance, not specified
- L73V (p.Leu73Val), ExAC rs762710836, gnomAD rs762710836, CADD 22.40, PolyPhen-2 0.01, Uncertain significance, not specified
- V74F (p.Val74Phe), TOPMed rs927288183, gnomAD rs927288183, CADD 19.10, PolyPhen-2 0.00, Uncertain significance
- V74I (p.Val74Ile), rs927288183, ClinGen CA138960767, ClinVar RCV004206740, TOPMed rs927288183, CADD 17.60, PolyPhen-2 0.00, Uncertain significance, not specified
- A75G (p.Ala75Gly), 1000Genomes rs564804648, ExAC rs564804648, gnomAD rs564804648, CADD 24.40, PolyPhen-2 0.13
- F76Y (p.Phe76Tyr), TOPMed rs1766237346, Uncertain significance, not specified
- Q77L (p.Gln77Leu), ExAC rs780578811, TOPMed rs780578811, gnomAD rs780578811, CADD 23.50, PolyPhen-2 0.28, Uncertain significance, not specified
- Q77R (p.Gln77Arg), ExAC rs780578811, TOPMed rs780578811, gnomAD rs780578811, CADD 24.80, PolyPhen-2 0.89, Uncertain significance, not specified
- R78L (p.Arg78Leu), ExAC rs779258364, gnomAD rs779258364, CADD 22.50, PolyPhen-2 0.10
- R78Q (p.Arg78Gln), ExAC rs779258364, gnomAD rs779258364, CADD 22.40, PolyPhen-2 0.10
- R78W (p.Arg78Trp), 1000Genomes rs2307318, ESP rs2307318, ExAC rs2307318, TOPMed rs2307318, CADD 26.70, PolyPhen-2 0.92, Uncertain significance, not specified
- A79S (p.Ala79Ser), Ensembl rs1766234339, CADD 24.70, PolyPhen-2 0.45
- L80I (p.Leu80Ile), ExAC rs757401660, TOPMed rs757401660, gnomAD rs757401660
- L80V (p.Leu80Val), ExAC rs757401660, TOPMed rs757401660, gnomAD rs757401660, CADD 23.00, PolyPhen-2 0.26
- K81R (p.Lys81Arg), Ensembl rs372824866, CADD 22.80, PolyPhen-2 0.28, Uncertain significance, not specified
- D82V (p.Asp82Val), cosmic curated COSV57718, TOPMed rs1477822068, gnomAD rs1477822068
- D82H (p.Asp82His), ExAC rs754087825, TOPMed rs754087825, gnomAD rs754087825, CADD 26.80, PolyPhen-2 0.61, Uncertain significance, not specified
- D82N (p.Asp82Asn), ExAC rs754087825, TOPMed rs754087825, gnomAD rs754087825, CADD 22.90, PolyPhen-2 0.01
- F83S (p.Phe83Ser), Ensembl rs2128284529, CADD 23.90
- A85T (p.Ala85Thr), Ensembl rs1766230814, CADD 22.30, PolyPhen-2 0.01
- A85V (p.Ala85Val), ExAC rs777668993, TOPMed rs777668993, gnomAD rs777668993, CADD 23.10, PolyPhen-2 0.06
- I87T (p.Ile87Thr), ExAC rs752763585, TOPMed rs752763585, gnomAD rs752763585, CADD 23.10, PolyPhen-2 0.01
- I87V (p.Ile87Val), ExAC rs756199726, TOPMed rs756199726, gnomAD rs756199726, CADD 16.30, PolyPhen-2 0.00
- D88A (p.Asp88Ala), TOPMed rs1488506317
- D88H (p.Asp88His), NCI-TCGA Cosmic COSV1000, cosmic curated COSV10000, Variant assessed as somatic; moderate impact.
- D88V (p.Asp88Val), TOPMed rs1488506317, CADD 29.80, PolyPhen-2 0.91
- D88Y (p.Asp88Tyr), ExAC rs767489375, gnomAD rs767489375, CADD 25.00, PolyPhen-2 0.98
- A89D (p.Ala89Asp), Ensembl rs972951772
- T90A (p.Thr90Ala), gnomAD rs1423554744, CADD 22.00, PolyPhen-2 0.01
- Y91* (p.Tyr91Ter), cosmic curated COSV57717
- Y91C (p.Tyr91Cys), gnomAD rs1259052165, CADD 29.70, PolyPhen-2 0.95
- A92T (p.Ala92Thr), gnomAD rs962594336, CADD 22.80, PolyPhen-2 0.46
- A92V (p.Ala92Val), gnomAD rs1016655279, CADD 23.40, PolyPhen-2 0.05
- K93E (p.Lys93Glu), Ensembl rs985215244, CADD 23.60, PolyPhen-2 0.30
- K93N (p.Lys93Asn), NCI-TCGA Cosmic COSV5771, cosmic curated COSV57717, Variant assessed as somatic; moderate impact.
- Q94* (p.Gln94Ter), TOPMed rs1766224432
- Q94H (p.Gln94His), NCI-TCGA Cosmic COSV5771, cosmic curated COSV57718, Variant assessed as somatic; moderate impact.
- Y95F (p.Tyr95Phe), Ensembl rs1766224131, CADD 21.20, PolyPhen-2 0.00
- E97D (p.Glu97Asp), Ensembl rs930752606
- F98L (p.Phe98Leu), ExAC rs759605459, gnomAD rs759605459, CADD 23.70, PolyPhen-2 0.12
- Y99C (p.Tyr99Cys), 1000Genomes rs142196279, ESP rs142196279, ExAC rs142196279, TOPMed rs142196279, CADD 28.40, PolyPhen-2 0.76, Uncertain significance, not specified
- Y99H (p.Tyr99His), gnomAD rs1318409377, CADD 23.20, PolyPhen-2 0.01
- V100A (p.Val100Ala), TOPMed rs921984322, gnomAD rs921984322, CADD 24.60, PolyPhen-2 0.20
- V100E (p.Val100Glu), TOPMed rs921984322, gnomAD rs921984322, CADD 28.60, PolyPhen-2 0.70
- V100L (p.Val100Leu), rs146219216, ClinGen CA3855219, ClinVar RCV004345440, 1000Genomes rs146219216, CADD 15.80, PolyPhen-2 0.01, Uncertain significance, not specified
- G101A (p.Gly101Ala), ExAC rs764837213, TOPMed rs764837213, gnomAD rs764837213, CADD 23.20, PolyPhen-2 0.32
- G101R (p.Gly101Arg), TOPMed rs975283792, gnomAD rs975283792, CADD 27.90, PolyPhen-2 0.99
- L102P (p.Leu102Pro), rs1459531760, ClinGen CA364450576, ClinVar RCV004123529, TOPMed rs1459531760, CADD 29.30, PolyPhen-2 0.91, Uncertain significance, not specified
- S105G (p.Ser105Gly), rs2307332, UniProt VAR 014810, ExAC rs2307332, gnomAD rs2307332, CADD 27.20, PolyPhen-2 0.85
- S105R (p.Ser105Arg), ExAC rs2307332, gnomAD rs2307332, CADD 28.30, PolyPhen-2 0.95
- S108F (p.Ser108Phe), ExAC rs746375857, gnomAD rs746375857, CADD 24.90, PolyPhen-2 0.77
- K109R (p.Lys109Arg), cosmic curated COSV10000
- H110Q (p.His110Gln), 1000Genomes rs200770127, ExAC rs200770127, TOPMed rs200770127, gnomAD rs200770127, CADD 1.67, PolyPhen-2 0.93
- S112C (p.Ser112Cys), TOPMed rs1415108126, gnomAD rs1415108126, CADD 25.60, PolyPhen-2 0.77
- S112Y (p.Ser112Tyr), TOPMed rs1415108126, gnomAD rs1415108126, CADD 25.30, PolyPhen-2 0.71
- P113L (p.Pro113Leu), 1000Genomes rs544581237, ExAC rs544581237, TOPMed rs544581237, gnomAD rs544581237, CADD 27.20, PolyPhen-2 1.00
- P113S (p.Pro113Ser), gnomAD rs1766215318, CADD 25.90
- R114H (p.Arg114His), cosmic curated COSV57716, ExAC rs750663816, TOPMed rs750663816, gnomAD rs750663816
- R114Q (p.Arg114Gln), cosmic curated COSV57716
- R114P (p.Arg114Pro), ExAC rs200787507, TOPMed rs200787507, gnomAD rs200787507
- R114W (p.Arg114Trp), rs748245826, ClinGen CA3855207, ClinVar RCV004248958, ExAC rs748245826, CADD 26.60, PolyPhen-2 1.00, Uncertain significance, not specified
- L116V (p.Leu116Val), Ensembl rs2128284455, CADD 26.00, PolyPhen-2 0.97
- T117N (p.Thr117Asn), ExAC rs754897017, gnomAD rs754897017, CADD 22.00, PolyPhen-2 0.01
- S118F (p.Ser118Phe), TOPMed rs1766211112, CADD 29.50, PolyPhen-2 0.90
- F120L (p.Phe120Leu), rs1000512618, ClinGen CA138957210, ClinVar RCV004419195, TOPMed rs1000512618, CADD 20.90, PolyPhen-2 0.00, Uncertain significance, not specified
- F120V (p.Phe120Val), 1000Genomes rs575728435, cosmic curated COSV57719, CADD 23.20, PolyPhen-2 0.21
- L121H (p.Leu121His), NCI-TCGA Cosmic COSV1000, cosmic curated COSV10000, Variant assessed as somatic; moderate impact.
- L121S (p.Leu121Ser), cosmic curated COSV57719
- S122C (p.Ser122Cys), ExAC rs758234731, gnomAD rs758234731, CADD 27.10, PolyPhen-2 0.83
- C123W (p.Cys123Trp), 1000Genomes rs559245707, ExAC rs559245707, gnomAD rs559245707, CADD 25.60, PolyPhen-2 0.74
- C123Y (p.Cys123Tyr), Ensembl rs1020552892
- V125G (p.Val125Gly), ExAC rs764929595, gnomAD rs764929595, CADD 28.80, PolyPhen-2 0.99
- C126F (p.Cys126Phe), rs776136477, ClinGen CA3855197, ClinVar RCV004419196, ExAC rs776136477, CADD 27.20, PolyPhen-2 1.00, Uncertain significance, not specified
- V127L (p.Val127Leu), 1000Genomes rs573520418, ExAC rs573520418, TOPMed rs573520418, gnomAD rs573520418, CADD 16.70
- V127M (p.Val127Met), 1000Genomes rs573520418, ExAC rs573520418, TOPMed rs573520418, gnomAD rs573520418, CADD 24.80, PolyPhen-2 0.87
- G129D (p.Gly129Asp), cosmic curated COSV57717
- G129S (p.Gly129Ser), cosmic curated COSV57717
- I130L (p.Ile130Leu), TOPMed rs1463282001, gnomAD rs1463282001, CADD 28.80, PolyPhen-2 1.00
- V131A (p.Val131Ala), NCI-TCGA Cosmic COSV1000, cosmic curated COSV10000, Variant assessed as somatic; moderate impact.
- V131F (p.Val131Phe), ExAC rs749662720, gnomAD rs749662720
- V131I (p.Val131Ile), ExAC rs749662720, gnomAD rs749662720, CADD 21.00, PolyPhen-2 0.22
- T132I (p.Thr132Ile), TOPMed rs1012419909
- C134F (p.Cys134Phe), TOPMed rs1323593904, gnomAD rs1323593904, CADD 33.00, PolyPhen-2 0.86
- L136P (p.Leu136Pro), rs1265196507, ClinGen CA364450357, ClinVar RCV004265599, gnomAD rs1265196507, CADD 31.00, PolyPhen-2 0.98, Uncertain significance, not specified
- R138C (p.Arg138Cys), rs371347878, cosmic curated COSV57717, ESP rs371347878, ExAC rs371347878, CADD 33.00, PolyPhen-2 0.99, Uncertain significance, not specified
- R138H (p.Arg138His), rs752149151, NCI-TCGA Cosmic COSV5771, ExAC rs752149151, TOPMed rs752149151, CADD 24.80, PolyPhen-2 0.27, Variant assessed as somatic; moderate impact.
- K140E (p.Lys140Glu), TOPMed rs900735602, CADD 31.00, PolyPhen-2 1.00
- K140N (p.Lys140Asn), ExAC rs766941891, gnomAD rs766941891, CADD 25.60, PolyPhen-2 1.00
- V142I (p.Val142Ile), rs1033238760, NCI-TCGA Cosmic COSV5771, cosmic curated COSV57719, gnomAD rs1033238760, CADD 20.90, PolyPhen-2 0.29, Variant assessed as somatic; moderate impact.
- R143C (p.Arg143Cys), 1000Genomes rs185309475, ExAC rs185309475, TOPMed rs185309475, gnomAD rs185309475, CADD 26.30, PolyPhen-2 0.08, Uncertain significance, not specified
- R143H (p.Arg143His), rs765811660, NCI-TCGA Cosmic COSV5771, cosmic curated COSV57717, ExAC rs765811660, CADD 25.20, PolyPhen-2 0.08, Variant assessed as somatic; moderate impact.
- R143L (p.Arg143Leu), ExAC rs765811660, TOPMed rs765811660, gnomAD rs765811660
- R143S (p.Arg143Ser), NCI-TCGA Cosmic COSV1000, cosmic curated COSV10000, Variant assessed as somatic; moderate impact.
- V145I (p.Val145Ile), cosmic curated COSV57719, 1000Genomes rs146219216, ExAC rs146219216, TOPMed rs146219216, Uncertain significance
- H146Q (p.His146Gln), Ensembl rs970205248
- Y147D (p.Tyr147Asp), rs762077566, ClinGen CA3855152, ClinVar RCV004419197, ExAC rs762077566, CADD 31.00, PolyPhen-2 0.99, Uncertain significance, not specified
- C148R (p.Cys148Arg), NCI-TCGA Cosmic COSV1000, cosmic curated COSV10000, CADD 31.00, PolyPhen-2 1.00, Variant assessed as somatic; moderate impact.
- P149L (p.Pro149Leu), gnomAD rs1467305201
Public MCM3 analysis runs
- MCM3 analysis run — MCM3 (1,199 variants) — completed 2026-08-20