LPL (Lipoprotein lipase) variants and mutations
LPL (also known as Lipoprotein lipase) is a human protein-coding gene encoding a lipoprotein lipase protein. It hydrolyzes triglycerides in circulating chylomicrons and very-low-density lipoproteins so tissues can take up released fatty acids. Severe biallelic loss causes familial chylomicronemia, while common variation strongly influences triglyceride levels and cardiovascular risk. This analysis covers 793 LPL variants and mutations. Of these, 90% have computational variant effect predictions. Disease context includes familial lipoprotein lipase deficiency, Hyperlipoproteinemia type 1, and Combined hyperlipidemia. Example LPL variants include M1I, E2D, and E2K.
Variant analysis overview
- Gene: LPL
- Protein: Lipoprotein lipase
- UniProt accession: P06858
- Organism: Homo sapiens
- Variants analyzed: 793
- Variant scope: all variants
- Completed: 2026-08-18
Variant and mutation evidence
- Variant composition: 685 unspecified-consequence records; 4 stop-gained variants; 51 missense variants; 39 synonymous variants; 10 frameshift variants; 1 in-frame insertions; 1 in-frame deletions; 2 splice-region variants
- Prediction scores: 710 variants have prediction scores (90% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: familial lipoprotein lipase deficiency, Hyperlipoproteinemia type 1, Combined hyperlipidemia, coronary artery disorder, metabolic syndrome, type 2 diabetes mellitus, myocardial infarction, Hypercholesterolemia, metabolic disease, familial hyperlipidemia, hyperlipidemia, Hyperapobetalipoproteinemia.
Protein structure and variant hotspots
- Protein features: 1 domains; 4 binding sites; 5 post-translational modification sites.
- Structural context: 169 variants have structural context.
- PTM context: 10 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable LPL variants
Examples include M1I, E2D, E2K, E2V, E2*, E2G, E2E, S3N. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- M1I (p.Met1Ile), rs2540092140, ClinGen CA370464586, ClinVar RCV002841954, Pathogenic, Hyperlipoproteinemia, type I; Hyperlipidemia, familial combined, LPL related
- E2D (p.Glu2Asp), ExAC rs753472797, TOPMed rs753472797, gnomAD rs753472797, MetaLR 0.56, MetaSVM -0.10, Likely benign
- E2K (p.Glu2Lys), gnomAD rs1341991169, MetaLR 0.41, MetaSVM -0.58
- E2V (p.Glu2Val), TOPMed rs1197167392, gnomAD rs1197167392, MetaLR 0.52, MetaSVM -0.24
- E2* (p.Glu2Ter), gnomAD 8-19939444-G-T, CADD 37.00
- E2G (p.Glu2Gly), gnomAD 8-19939445-A-G, MetaLR 0.41, MetaSVM -0.49
- E2E (p.Glu2Glu), rs753472797, gnomAD 8-19939446-G-A, CADD 13.30
- S3N (p.Ser3Asn), rs367592716, ClinGen CA4655259, ClinVar RCV002282815, ClinVar RCV002373078, MetaLR 0.56, MetaSVM 0.27, Uncertain significance, Cardiovascular phenotype; Hyperlipidemia, familial combined, LPL related; Hyperl
- S3R (p.Ser3Arg), Ensembl rs1563561515, MetaLR 0.55, MetaSVM 0.13
- S3S (p.Ser3Ser), rs962085823, gnomAD 8-19939449-C-T, CADD 14.80
- K4R (p.Lys4Arg), TOPMed rs1396954757, MetaLR 0.52, MetaSVM -0.04
- K4S (p.Lys4Ser), gnomAD 8-19939449-CAA-C, CADD 25.60
- A5T (p.Ala5Thr), gnomAD rs1208045265, MetaLR 0.50, MetaSVM -0.36
- A5D (p.Ala5Asp), gnomAD 8-19939454-C-A, MetaLR 0.59, MetaSVM -0.10
- A5A (p.Ala5Ala), rs554223627, gnomAD 8-19939455-C-T, CADD 4.79
- L6R (p.Leu6Arg), Ensembl rs2069809872, MetaLR 0.66, MetaSVM 0.13
- L6P (p.Leu6Pro), gnomAD 8-19939457-T-C, MetaLR 0.68, MetaSVM 0.17
- L6L (p.Leu6Leu), gnomAD 8-19939458-G-T, CADD 11.10
- p.Leu7dup, rs973095042, gnomAD 8-19939454-C-CCCT, CADD 15.40
- L7I (p.Leu7Ile), gnomAD 8-19939459-C-A, MetaLR 0.36, MetaSVM -0.79
- L7F (p.Leu7Phe), gnomAD 8-19939459-C-T, MetaLR 0.46, MetaSVM -0.68
- L7H (p.Leu7His), gnomAD 8-19939460-T-A, MetaLR 0.64, MetaSVM -0.02
- L7L (p.Leu7Leu), rs1192863284, gnomAD 8-19939461-C-A, CADD 10.40
- V8M (p.Val8Met), TOPMed rs920363064, MetaLR 0.37, MetaSVM -0.59
- V8L (p.Val8Leu), gnomAD 8-19939462-G-C, MetaLR 0.18, MetaSVM -0.80
- V8A (p.Val8Ala), gnomAD 8-19939463-T-C, MetaLR 0.40, MetaSVM -0.52
- V8V (p.Val8Val), gnomAD 8-19939464-G-A, CADD 11.40
- L9P (p.Leu9Pro), gnomAD rs1371129158, MetaLR 0.56, MetaSVM -0.08
- L9V (p.Leu9Val), gnomAD 8-19939465-C-G, MetaLR 0.28, MetaSVM -0.77
- T10N (p.Thr10Asn), gnomAD 8-19939469-C-A, MetaLR 0.38, MetaSVM -0.75
- L11M (p.Leu11Met), gnomAD 8-19939471-C-A, MetaLR 0.77, MetaSVM 0.69
- L11L (p.Leu11Leu), gnomAD 8-19939471-C-T, CADD 12.90
- L11P (p.Leu11Pro), gnomAD 8-19939472-T-C, MetaLR 0.80, MetaSVM 0.78
- A12V (p.Ala12Val), rs758119828, ClinGen CA4655262, ClinVar RCV003085742, ClinVar RCV003161704, MetaLR 0.40, MetaSVM -0.40, Uncertain significance, Cardiovascular phenotype; not provided
- A12T (p.Ala12Thr), gnomAD 8-19939474-G-A, MetaLR 0.32, MetaSVM -0.70
- A12S (p.Ala12Ser), gnomAD 8-19939474-G-T, MetaLR 0.23, MetaSVM -0.81
- A12A (p.Ala12Ala), gnomAD 8-19939476-C-G, CADD 13.70
- V13A (p.Val13Ala), ExAC rs755056538, gnomAD rs755056538, MetaLR 0.48, MetaSVM -0.60
- V13G (p.Val13Gly), ExAC rs755056538, gnomAD rs755056538, MetaLR 0.56, MetaSVM -0.53
- V13L (p.Val13Leu), rs751494597, ClinGen CA4655264, ClinVar RCV002355177, ClinVar RCV003094369, MetaLR 0.35, MetaSVM -0.74, Uncertain significance, Cardiovascular phenotype; not provided
- V13M (p.Val13Met), ExAC rs751494597, TOPMed rs751494597, gnomAD rs751494597, MetaLR 0.48, MetaSVM -0.63, Uncertain significance
- V13V (p.Val13Val), gnomAD 8-19939479-G-A, CADD 13.60
- W14* (p.Trp14Ter), rs1590134297, ClinGen CA370464663, ClinVar RCV000796878, Ensembl rs1590134297, CADD 41.00, Pathogenic
- W14L (p.Trp14Leu), gnomAD 8-19939481-G-T, MetaLR 0.51, MetaSVM 0.08
- L15I (p.Leu15Ile), rs781367198, ClinGen CA4655266, ClinVar RCV003221612, ExAC rs781367198, MetaLR 0.60, MetaSVM -0.54, Uncertain significance, not provided
- L15L (p.Leu15Leu), gnomAD 8-19939485-C-A, CADD 12.10
- Q16H (p.Gln16His), gnomAD rs1294130429, MetaLR 0.44, MetaSVM -0.67
- Q16E (p.Gln16Glu), rs1376148269, gnomAD 8-19939485-CCA-C, CADD 32.00
- p.Gln16 Thr19delinsPro, rs765192293, gnomAD 8-19939486-CAGAGT, CADD 21.70
- S17G (p.Ser17Gly), ExAC rs756418111, TOPMed rs756418111, gnomAD rs756418111, MetaLR 0.38, MetaSVM -0.63
- S17N (p.Ser17Asn), TOPMed rs1186635449, gnomAD rs1186635449, MetaLR 0.52, MetaSVM -0.53
- S17T (p.Ser17Thr), gnomAD 8-19939490-G-C, MetaLR 0.52, MetaSVM -0.63
- L18V (p.Leu18Val), TOPMed rs1259299905, gnomAD rs1259299905, MetaLR 0.63, MetaSVM -0.31, Uncertain significance, not provided
- L18D (p.Leu18Asp), gnomAD 8-19939486-CAG-C, CADD 27.80
- L18L (p.Leu18Leu), gnomAD 8-19939494-G-T, CADD 13.50
- T19I (p.Thr19Ile), ExAC rs749739032, gnomAD rs749739032, MetaLR 0.53, MetaSVM -0.64, Uncertain significance
- T19N (p.Thr19Asn), rs749739032, ClinGen CA370464728, ClinVar RCV002347548, ExAC rs749739032, MetaLR 0.55, MetaSVM -0.50, Uncertain significance, Cardiovascular phenotype
- T19P (p.Thr19Pro), ExAC rs778075626, gnomAD rs778075626, MetaLR 0.45, MetaSVM -0.72
- T19D (p.Thr19Asp), rs1228659919, gnomAD 8-19939492-C-CT, CADD 31.00
- T19T (p.Thr19Thr), rs771409952, gnomAD 8-19939497-C-A, CADD 11.60
- A20T (p.Ala20Thr), ExAC rs774768909, gnomAD rs774768909, MetaLR 0.57, MetaSVM -0.76
- A20V (p.Ala20Val), rs572477224, ClinGen CA4655274, ClinVar RCV000930734, ClinVar RCV001272625, MetaLR 0.58, MetaSVM -0.58, Likely benign, not provided
- A20S (p.Ala20Ser), gnomAD 8-19939498-G-T, MetaLR 0.47, MetaSVM -0.74
- A20D (p.Ala20Asp), gnomAD 8-19939499-C-A, MetaLR 0.72, MetaSVM -0.39
- A20A (p.Ala20Ala), rs1215798253, gnomAD 8-19939500-C-T, CADD 13.50
- S21Y (p.Ser21Tyr), gnomAD 8-19939502-C-A, MetaLR 0.57, MetaSVM -0.54
- S21S (p.Ser21Ser), rs772418131, gnomAD 8-19939503-C-T, CADD 13.40
- R22G (p.Arg22Gly), TOPMed rs980246871, gnomAD rs980246871, MetaLR 0.45, MetaSVM -0.57, Uncertain significance
- R22S (p.Arg22Ser), TOPMed rs980246871, gnomAD rs980246871, MetaLR 0.41, MetaSVM -0.67, Uncertain significance, Cardiovascular phenotype
- R22A (p.Arg22Ala), gnomAD 8-19939501-TC-T, CADD 22.80
- R22H (p.Arg22His), gnomAD 8-19939505-G-A, MetaLR 0.53, MetaSVM -0.65
- R22R (p.Arg22Arg), rs2069810910, gnomAD 8-19939506-C-T, CADD 11.70
- G23E (p.Gly23Glu), rs539997018, ClinGen CA4655276, ClinVar RCV003172689, 1000Genomes rs539997018, MetaLR 0.44, MetaSVM -0.69, Uncertain significance, Cardiovascular phenotype
- G23R (p.Gly23Arg), TOPMed rs2069810982, MetaLR 0.49, MetaSVM -0.64
- G23V (p.Gly23Val), 1000Genomes rs539997018, ExAC rs539997018, gnomAD rs539997018, MetaLR 0.57, MetaSVM -0.42, Uncertain significance
- G23* (p.Gly23Ter), gnomAD 8-19939507-G-T, CADD 36.00
- G24A (p.Gly24Ala), ExAC rs761167661, gnomAD rs761167661, MetaLR 0.36, MetaSVM -0.45
- G24R (p.Gly24Arg), TOPMed rs927527075, gnomAD rs927527075, MetaLR 0.46, MetaSVM -0.29
- G24V (p.Gly24Val), ExAC rs761167661, gnomAD rs761167661, MetaLR 0.44, MetaSVM -0.28
- G24E (p.Gly24Glu), gnomAD 8-19939511-G-A, MetaLR 0.40, MetaSVM -0.36
- G24G (p.Gly24Gly), gnomAD 8-19939512-G-A, CADD 12.40
- V25L (p.Val25Leu), gnomAD rs1395752390, MetaLR 0.40, MetaSVM -0.58
- V25M (p.Val25Met), gnomAD rs1395752390, MetaLR 0.53, MetaSVM -0.33
- V25W (p.Val25Trp), gnomAD 8-19939509-AG-A, CADD 27.40
- V25V (p.Val25Val), gnomAD 8-19939515-G-T, CADD 11.60
- A26T (p.Ala26Thr), Ensembl rs2128835150, MetaLR 0.34, MetaSVM -0.54
- A26V (p.Ala26Val), NCI-TCGA TCGA novel, MetaLR 0.45, MetaSVM -0.42, Variant assessed as somatic; moderate impact.
- A27S (p.Ala27Ser), rs1752693203, ClinGen CA370464855, ClinVar RCV002419154, Ensembl rs1752693203, AlphaMissense 0.08, MetaLR 0.31, Uncertain significance, Cardiovascular phenotype
- A27T (p.Ala27Thr), gnomAD 8-19939519-G-A, MetaLR 0.44, MetaSVM -0.53
- A27V (p.Ala27Val), gnomAD 8-19939520-C-T, MetaLR 0.47, MetaSVM -0.43
- A27A (p.Ala27Ala), rs764871141, gnomAD 8-19939521-C-A, CADD 11.30
- A28V (p.Ala28Val), ExAC rs11570895, gnomAD rs11570895, MetaLR 0.47, MetaSVM -0.74, Uncertain significance, Cardiovascular phenotype
- A28T (p.Ala28Thr), gnomAD 8-19939522-G-A, MetaLR 0.39, MetaSVM -0.71
- A28D (p.Ala28Asp), gnomAD 8-19939523-C-A, MetaLR 0.46, MetaSVM -0.74
- A28A (p.Ala28Ala), gnomAD 8-19939524-C-A, CADD 6.08
- D29E (p.Asp29Glu), Ensembl rs1563561734, MetaLR 0.43, MetaSVM -0.74, Uncertain significance, Hyperlipoproteinemia, type I
- D29H (p.Asp29His), ExAC rs762788938, gnomAD rs762788938, MetaLR 0.67, MetaSVM -0.43
- D29N (p.Asp29Asn), ExAC rs762788938, gnomAD rs762788938, MetaLR 0.48, MetaSVM -0.70, Uncertain significance, not specified
- D29Y (p.Asp29Tyr), gnomAD 8-19939525-G-T, MetaLR 0.71, MetaSVM -0.34
- D29D (p.Asp29Asp), gnomAD 8-19939527-C-T, CADD 12.40
- Q30R (p.Gln30Arg), rs780666488, ClinGen CA4655315, ClinVar RCV002376318, ExAC rs780666488, CADD 0.09, PolyPhen-2 0.00, Likely benign, Cardiovascular phenotype
- Q30* (p.Gln30Ter), gnomAD 8-19939528-C-T, CADD 34.00, SIFT 0.21
- R31G (p.Arg31Gly), gnomAD rs1462194970, CADD 8.77, PolyPhen-2 0.00
- R32F (p.Arg32Phe), rs1263698980, gnomAD 8-19948181-AAGAAG, CADD 23.90
- D33E (p.Asp33Glu), NCI-TCGA Cosmic COSV1002, Variant assessed as somatic; moderate impact.
- D33H (p.Asp33His), rs2069900175, ClinGen CA370466769, ClinVar RCV004522838, Ensembl rs2069900175, CADD 24.90, PolyPhen-2 0.92, Uncertain significance, Cardiovascular phenotype
- D33N (p.Asp33Asn), NCI-TCGA Cosmic COSV1002, Variant assessed as somatic; moderate impact.
- D33Y (p.Asp33Tyr), NCI-TCGA Cosmic COSV1002, SIFT 0.00, Variant assessed as somatic; moderate impact.
- D33D (p.Asp33Asp), rs747485781, gnomAD 8-19948190-T-C, CADD 3.49
- F34I (p.Phe34Ile), gnomAD 8-19948191-T-A, CADD 23.20, PolyPhen-2 0.52
- F34S (p.Phe34Ser), gnomAD 8-19948192-T-C, CADD 19.40, PolyPhen-2 0.20
- I35V (p.Ile35Val), TOPMed rs1373096843, gnomAD rs1373096843, CADD 0.12, PolyPhen-2 0.00
- I35Y (p.Ile35Tyr), gnomAD 8-19948189-A-AT, CADD 25.40
- I35I (p.Ile35Ile), rs145405273, gnomAD 8-19948196-C-T, CADD 0.17
- D36E (p.Asp36Glu), Ensembl rs2128836989, SIFT 0.12, Likely benign
- D36H (p.Asp36His), 1000Genomes rs1801177, ESP rs1801177, ExAC rs1801177, TOPMed rs1801177, CADD 24.10, PolyPhen-2 0.94, Benign
- D36N (p.Asp36Asn), rs1801177, ClinGen CA251889, ClinVar RCV000001617, ClinVar RCV000157298, CADD 19.60, PolyPhen-2 0.07, Benign/Likely benign; other, Cardiovascular phenotype; Hyperlipidemia, familial combined, LPL related; Hyperl
- D36Y (p.Asp36Tyr), 1000Genomes rs1801177, ESP rs1801177, ExAC rs1801177, TOPMed rs1801177, CADD 24.20, PolyPhen-2 0.97, Benign
- D36G (p.Asp36Gly), gnomAD 8-19948198-A-G, CADD 19.30, PolyPhen-2 0.03
- D36D (p.Asp36Asp), rs2128836989, gnomAD 8-19948199-C-T, CADD 5.71
- I37M (p.Ile37Met), ESP rs374067507, ExAC rs374067507, TOPMed rs374067507, gnomAD rs374067507, CADD 0.27, PolyPhen-2 1.00, Likely benign
- I37V (p.Ile37Val), rs538543355, 1000Genomes rs538543355, ExAC rs538543355, TOPMed rs538543355, CADD 22.10, PolyPhen-2 0.90, Variant assessed as somatic; moderate impact.
- I37I (p.Ile37Ile), rs374067507, gnomAD 8-19948202-C-T, CADD 0.08
- E38D (p.Glu38Asp), TOPMed rs1425616563, SIFT 0.14
- E38G (p.Glu38Gly), ESP rs142501489, ExAC rs142501489, TOPMed rs142501489, gnomAD rs142501489, CADD 23.40, PolyPhen-2 0.84
- E38K (p.Glu38Lys), rs557015233, ClinGen CA4655321, ClinVar RCV000932549, ClinVar RCV001159216, CADD 21.40, PolyPhen-2 0.20, Conflicting interpretations, not specified; not provided; Hyperlipoproteinemia, type I
- E38Q (p.Glu38Gln), gnomAD 8-19948203-G-C, CADD 22.60, PolyPhen-2 0.94
- E38* (p.Glu38Ter), gnomAD 8-19948203-G-T, CADD 37.00
- E38V (p.Glu38Val), gnomAD 8-19948204-A-T, CADD 21.90, PolyPhen-2 0.12
- S39G (p.Ser39Gly), gnomAD rs1233863372, CADD 24.10, PolyPhen-2 0.50
- S39I (p.Ser39Ile), TOPMed rs1004491546
- S39N (p.Ser39Asn), TOPMed rs1004491546, SIFT 0.01
- F41F (p.Phe41Phe), rs1278204240, gnomAD 8-19948214-T-C, CADD 11.50
- A42V (p.Ala42Val), NCI-TCGA Cosmic COSV6092, CADD 24.30, PolyPhen-2 0.68, Variant assessed as somatic; moderate impact.
- A42A (p.Ala42Ala), gnomAD 8-19948217-C-A, CADD 9.35
- L43Q (p.Leu43Gln), rs1423027681, ClinGen CA370466839, ClinVar RCV002383287, TOPMed rs1423027681, CADD 26.10, SIFT 0.00, Uncertain significance, Cardiovascular phenotype
- R44K (p.Arg44Lys), gnomAD rs1212193771, CADD 27.50, PolyPhen-2 1.00
- R44S (p.Arg44Ser), rs2069900707, ClinGen CA370466848, ClinVar RCV001580730, Ensembl rs2069900707, AlphaMissense 0.97, MetaLR 0.84, Uncertain significance, Hyperlipoproteinemia, type I
- R44W (p.Arg44Trp), NCI-TCGA Cosmic COSV6093, SIFT 0.01, Variant assessed as somatic; moderate impact.
- T45N (p.Thr45Asn), rs143944126, ClinGen CA4655323, ClinVar RCV001159217, ClinVar RCV002249741, CADD 23.70, PolyPhen-2 0.50, Uncertain significance, Hyperlipoproteinemia, type I; not provided; not specified
- T45P (p.Thr45Pro), gnomAD rs897164454, CADD 27.60, PolyPhen-2 0.98
- T45S (p.Thr45Ser), ESP rs143944126, ExAC rs143944126, TOPMed rs143944126, gnomAD rs143944126, CADD 22.60, PolyPhen-2 0.43, Uncertain significance
- T45H (p.Thr45His), gnomAD 8-19948223-GACCCC, CADD 29.50
- P46S (p.Pro46Ser), TOPMed rs1183798107, gnomAD rs1183798107, CADD 14.30, PolyPhen-2 0.09
- P46A (p.Pro46Ala), gnomAD 8-19948227-C-G, CADD 15.70, PolyPhen-2 0.05
- P46P (p.Pro46Pro), rs1188603468, gnomAD 8-19948229-T-A, CADD 5.03
- E47K (p.Glu47Lys), rs2128837004, gnomAD 8-19948228-CT-C, CADD 15.90
- D48G (p.Asp48Gly), 1000Genomes rs367924602, ESP rs367924602, ExAC rs367924602, TOPMed rs367924602, CADD 22.90, SIFT 0.51, Uncertain significance
- D48V (p.Asp48Val), 1000Genomes rs367924602, ESP rs367924602, ExAC rs367924602, TOPMed rs367924602, CADD 22.70, PolyPhen-2 0.01, Uncertain significance, Cardiovascular phenotype; not provided
- D48Y (p.Asp48Tyr), rs1015492279, ClinGen CA173374841, NCI-TCGA Cosmic COSV6093, ClinVar RCV004522835, CADD 22.10, PolyPhen-2 0.28, Uncertain significance, Cardiovascular phenotype
- T49I (p.Thr49Ile), NCI-TCGA Cosmic COSV6093, CADD 19.50, PolyPhen-2 0.01, Variant assessed as somatic; moderate impact.
- A50G (p.Ala50Gly), rs148201569, ClinGen CA4655325, ClinVar RCV004527029, ClinVar RCV004791689, CADD 20.20, PolyPhen-2 0.10, Uncertain significance, Cardiovascular phenotype; not provided; not specified
- A50P (p.Ala50Pro), TOPMed rs1199276271, SIFT 0.02
- A50V (p.Ala50Val), 1000Genomes rs148201569, ESP rs148201569, ExAC rs148201569, TOPMed rs148201569, CADD 16.40, PolyPhen-2 0.00, Uncertain significance
- E51D (p.Glu51Asp), NCI-TCGA TCGA novel, CADD 8.57, PolyPhen-2 0.01, Variant assessed as somatic; moderate impact.
- E51K (p.Glu51Lys), gnomAD rs1172697567, CADD 25.20, PolyPhen-2 0.43
- E51E (p.Glu51Glu), rs141136113, gnomAD 8-19948244-G-A, CADD 5.71
- D52N (p.Asp52Asn), TOPMed rs2069901214, CADD 29.10, PolyPhen-2 1.00
- D52D (p.Asp52Asp), rs765559575, gnomAD 8-19948247-C-T, CADD 9.84
- T53A (p.Thr53Ala), ExAC rs750594245, gnomAD rs750594245, CADD 18.80, PolyPhen-2 0.10
- T53I (p.Thr53Ile), gnomAD 8-19948249-C-T, CADD 14.20, PolyPhen-2 0.06
- C54R (p.Cys54Arg), gnomAD 8-19948251-T-C, CADD 29.20, PolyPhen-2 1.00
- C54S (p.Cys54Ser), gnomAD 8-19948252-G-C, CADD 27.90, PolyPhen-2 1.00
- L56R (p.Leu56Arg), rs2540099853, ClinGen CA370466925, ClinVar RCV003172690, Uncertain significance, Cardiovascular phenotype
- I57L (p.Ile57Leu), gnomAD 8-19948260-A-C, CADD 17.90, PolyPhen-2 0.08
- I57T (p.Ile57Thr), gnomAD 8-19948261-T-C, CADD 22.30, PolyPhen-2 0.28
- I57I (p.Ile57Ile), gnomAD 8-19948262-T-C, CADD 8.92
- P58S (p.Pro58Ser), ExAC rs758843839, gnomAD rs758843839, CADD 23.10, PolyPhen-2 0.96
- P58A (p.Pro58Ala), gnomAD 8-19948263-C-G, CADD 22.30, PolyPhen-2 0.60
- P58R (p.Pro58Arg), gnomAD 8-19948264-C-G, CADD 23.40, PolyPhen-2 0.71
- P58P (p.Pro58Pro), rs372554872, gnomAD 8-19948265-C-T, CADD 3.96
- G59* (p.Gly59Ter), 1000Genomes rs375484335, ESP rs375484335, ExAC rs375484335, TOPMed rs375484335, CADD 39.00
- G59R (p.Gly59Arg), 1000Genomes rs375484335, ESP rs375484335, ExAC rs375484335, TOPMed rs375484335, CADD 27.40, PolyPhen-2 0.98
- G59G (p.Gly59Gly), gnomAD 8-19948268-A-G, CADD 8.23
- V60I (p.Val60Ile), TOPMed rs887595131, gnomAD rs887595131, CADD 5.47, PolyPhen-2 0.00, Uncertain significance
- V60L (p.Val60Leu), rs887595131, ClinGen CA370466943, ClinVar RCV003324323, TOPMed rs887595131, CADD 6.10, PolyPhen-2 0.00, Uncertain significance, not specified
- V60V (p.Val60Val), gnomAD 8-19948271-A-G, CADD 1.97
- A61E (p.Ala61Glu), ExAC rs748863604, gnomAD rs748863604, CADD 1.01, PolyPhen-2 0.00
- A61V (p.Ala61Val), ExAC rs748863604, gnomAD rs748863604, CADD 7.84, PolyPhen-2 0.00
- A61P (p.Ala61Pro), gnomAD 8-19948272-G-C, CADD 0.04, PolyPhen-2 0.00
Public LPL analysis runs
- LPL analysis run — LPL (793 variants) — completed 2026-08-18