APOC2 (Apolipoprotein C-II) variants and mutations
APOC2 (also known as Apolipoprotein C-II) is a human protein-coding gene encoding an apolipoprotein C-II protein. By activating lipoprotein lipase, it enables hydrolysis of triglycerides in chylomicrons and very-low-density lipoproteins. Biallelic deficiency causes familial chylomicronemia with extreme hypertriglyceridemia and recurrent pancreatitis. This analysis covers 240 APOC2 variants and mutations. Of these, 82% have computational variant effect predictions. Disease context includes familial apolipoprotein C-II deficiency, Hyperlipoproteinemia type 1, and Abnormality of the cardiovascular system. Example APOC2 variants include G2D, G2R, and G2S.
Variant analysis overview
- Gene: APOC2
- Protein: Apolipoprotein C-II
- UniProt accession: P02655
- Organism: Homo sapiens
- Variants analyzed: 240
- Variant scope: all variants
- Completed: 2026-08-20
Variant and mutation evidence
- Variant composition: 133 unspecified-consequence records; 35 synonymous variants; 57 missense variants; 7 frameshift variants; 1 in-frame deletions; 5 stop-gained variants; 2 stop lost
- Prediction scores: 198 variants have prediction scores (82% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: familial apolipoprotein C-II deficiency, Hyperlipoproteinemia type 1, Abnormality of the cardiovascular system, familial chylomicronemia syndrome, amyloidosis, Alzheimer disease, coronary artery disorder, Hypercholesterolemia, heart disorder, hyperlipidemia, metabolic disease, obesity disorder.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, ClinGen, MaveDB, LitVar.
Notable APOC2 variants
Examples include G2D, G2R, G2S, G2G, T3I, T3A, R4*, R4G. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- G2D (p.Gly2Asp), cosmic curated COSV52991
- G2R (p.Gly2Arg), rs1970346812, ClinGen CA406291474, ClinVar RCV002343058, REVEL 0.25, CADD 16.40, Uncertain significance, Cardiovascular phenotype
- G2S (p.Gly2Ser), cosmic curated COSV52990, Ensembl rs1970346812, REVEL 0.32, CADD 12.90
- G2G (p.Gly2Gly), gnomAD 19-44948484-C-T, CADD 3.50
- T3I (p.Thr3Ile), rs148343756, ClinGen CA9506565, ClinVar RCV002096391, ClinVar RCV002372927, REVEL 0.11, CADD 8.13, Conflicting interpretations, Cardiovascular phenotype; not provided
- T3A (p.Thr3Ala), gnomAD 19-44948485-A-G, REVEL 0.14, CADD 0.20
- R4* (p.Arg4Ter), rs202190413, ClinGen CA9506567, NCI-TCGA Cosmic COSV9937, cosmic curated COSV99377, CADD 35.00, Pathogenic
- R4G (p.Arg4Gly), rs202190413, ClinGen CA9506566, ClinVar RCV002430832, ClinVar RCV003108107, REVEL 0.40, CADD 22.30, Uncertain significance, not provided; Cardiovascular phenotype; Familial apolipoprotein C-II deficiency
- R4Q (p.Arg4Gln), rs750459826, ClinGen CA9506569, ClinVar RCV002347083, ExAC rs750459826, REVEL 0.46, CADD 24.20, Uncertain significance, Cardiovascular phenotype
- R4R (p.Arg4Arg), rs202190413, gnomAD 19-44948488-C-A, CADD 5.23
- R4C (p.Arg4Cys), rs535665191, gnomAD 19-44948807-C-T, CADD 0.14
- L5F (p.Leu5Phe), gnomAD 19-44948491-C-T, REVEL 0.14, CADD 0.96
- L5I (p.Leu5Ile), gnomAD 19-44948491-C-A, REVEL 0.19, CADD 3.30
- L5L (p.Leu5Leu), gnomAD 19-44948493-C-T, CADD 5.05
- L6F (p.Leu6Phe), gnomAD 19-44948494-C-T, REVEL 0.06, CADD 8.06
- L6P (p.Leu6Pro), gnomAD 19-44948495-T-C, REVEL 0.65, CADD 25.30
- P7A (p.Pro7Ala), ESP rs141530175, ExAC rs141530175, gnomAD rs141530175, REVEL 0.15, CADD 11.00
- A8G (p.Ala8Gly), 1000Genomes rs544199287, ExAC rs544199287, TOPMed rs544199287, gnomAD rs544199287, REVEL 0.26, CADD 22.90
- A8P (p.Ala8Pro), TOPMed rs909824341, REVEL 0.67, CADD 22.40
- A8T (p.Ala8Thr), TOPMed rs909824341
- A8V (p.Ala8Val), 1000Genomes rs544199287, ExAC rs544199287, TOPMed rs544199287, gnomAD rs544199287, REVEL 0.16, CADD 10.60
- A8D (p.Ala8Asp), gnomAD 19-44948501-C-A, REVEL 0.56, CADD 20.50
- A8A (p.Ala8Ala), rs751752773, gnomAD 19-44948502-T-G, CADD 5.05
- L9P (p.Leu9Pro), cosmic curated COSV52989
- L9V (p.Leu9Val), TOPMed rs1970347210
- L11L (p.Leu11Leu), rs1392234344, gnomAD 19-44948511-T-C, CADD 0.14
- V12I (p.Val12Ile), rs150887575, ClinGen CA9506574, cosmic curated COSV10608, ClinVar RCV002092153, REVEL 0.09, CADD 0.10, Likely benign, not provided
- V12L (p.Val12Leu), 1000Genomes rs150887575, ESP rs150887575, ExAC rs150887575, TOPMed rs150887575, REVEL 0.16, CADD 0.44, Likely benign
- V12V (p.Val12Val), gnomAD 19-44948514-C-T, CADD 1.18
- L13F (p.Leu13Phe), TOPMed rs1039763443, gnomAD rs1039763443, REVEL 0.28, CADD 23.20
- L13L (p.Leu13Leu), gnomAD 19-44948517-C-T, CADD 5.34
- L14P (p.Leu14Pro), TOPMed rs11553150, gnomAD rs11553150, REVEL 0.75, CADD 27.20
- L14V (p.Leu14Val), gnomAD 19-44948518-C-G, REVEL 0.54, CADD 18.00
- L14L (p.Leu14Leu), rs140169122, gnomAD 19-44948518-C-T, CADD 10.30
- V15L (p.Val15Leu), gnomAD rs1970347506, REVEL 0.18, CADD 13.10
- V15V (p.Val15Val), gnomAD 19-44948523-A-G, CADD 4.42
- L16F (p.Leu16Phe), cosmic curated COSV10586
- G17R (p.Gly17Arg), 1000Genomes rs145690472
- F18C (p.Phe18Cys), cosmic curated COSV52991, ExAC rs757247241, gnomAD rs757247241, REVEL 0.12, CADD 11.00
- F18S (p.Phe18Ser), ExAC rs757247241, gnomAD rs757247241, REVEL 0.19, CADD 10.00
- F18V (p.Phe18Val), rs1970347563, ClinGen CA406292005, ClinVar RCV002344589, TOPMed rs1970347563, AlphaMissense 0.21, MetaLR 0.35, Uncertain significance, Cardiovascular phenotype
- E19* (p.Glu19Ter), rs2513572335, ClinGen CA406292025, ClinVar RCV003990067, Uncertain significance
- E19D (p.Glu19Asp), gnomAD 19-44948702-G-C, REVEL 0.48, CADD 22.60
- V20G (p.Val20Gly), TOPMed rs1350379660, gnomAD rs1350379660, REVEL 0.34, CADD 19.80
- V20I (p.Val20Ile), ESP rs201709243, ExAC rs201709243, TOPMed rs201709243, gnomAD rs201709243, REVEL 0.38, CADD 17.90, Uncertain significance, Familial apolipoprotein C-II deficiency
- V20V (p.Val20Val), rs746715271, gnomAD 19-44948705-C-T, CADD 7.99
- Q21H (p.Gln21His), gnomAD 19-44948708-G-T, REVEL 0.51, CADD 22.80
- Q21Q (p.Gln21Gln), rs768288162, gnomAD 19-44948708-G-A, CADD 4.64
- G22R (p.Gly22Arg), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- T23I (p.Thr23Ile), rs994371401, ClinGen CA308875692, ClinVar RCV002362318, ClinVar RCV005019190, REVEL 0.10, CADD 1.06, Uncertain significance, Cardiovascular phenotype; Familial apolipoprotein C-II deficiency
- T23P (p.Thr23Pro), gnomAD 19-44948712-A-C, REVEL 0.21, CADD 0.03
- T23T (p.Thr23Thr), gnomAD 19-44948714-C-A, CADD 2.74
- Q24K (p.Gln24Lys), Ensembl rs1130711
- Q24N (p.Gln24Asn), gnomAD 19-44948712-AC-A, CADD 16.10
- Q25K (p.Gln25Lys), rs144145394, ClinGen CA308875710, ClinVar RCV002380510, ESP rs144145394, REVEL 0.12, CADD 0.00, Uncertain significance, Cardiovascular phenotype
- p.Gln25 Gln28del, gnomAD 19-44948714-CCAAC, CADD 10.80
- Q25E (p.Gln25Glu), gnomAD 19-44948718-C-G, REVEL 0.12, CADD 0.00
- Q25* (p.Gln25Ter), gnomAD 19-44948718-C-T, CADD 33.00
- Q25Q (p.Gln25Gln), rs1218866424, gnomAD 19-44948720-G-A, CADD 0.62
- P26H (p.Pro26His), TOPMed rs1238211981, REVEL 0.22, CADD 15.60, Uncertain significance, Cardiovascular phenotype
- P26T (p.Pro26Thr), cosmic curated COSV52990, TOPMed rs1475130497, gnomAD rs1475130497, REVEL 0.12, CADD 0.20
- P26P (p.Pro26Pro), rs2122209919, gnomAD 19-44948723-C-A, CADD 0.80
- Q27* (p.Gln27Ter), TOPMed rs1970350323, gnomAD rs1970350323, CADD 33.00, Likely pathogenic
- Q27Q (p.Gln27Gln), gnomAD 19-44948726-G-A, CADD 2.64
- Q28R (p.Gln28Arg), rs1212588079, ClinGen CA406292335, ClinVar RCV003176548, TOPMed rs1212588079, REVEL 0.30, CADD 12.60, Uncertain significance, Cardiovascular phenotype
- Q28Q (p.Gln28Gln), rs781606926, gnomAD 19-44948729-A-G, CADD 0.26
- D29H (p.Asp29His), 1000Genomes rs147242592, ESP rs147242592, ExAC rs147242592, TOPMed rs147242592, Likely benign
- D29N (p.Asp29Asn), rs147242592, ClinGen CA9506603, ClinVar RCV001134431, ClinVar RCV001700702, REVEL 0.41, CADD 23.30, Conflicting interpretations, not provided; Familial apolipoprotein C-II deficiency
- D29E (p.Asp29Glu), gnomAD 19-44948732-T-G, REVEL 0.30, CADD 2.36
- D29D (p.Asp29Asp), gnomAD 19-44948732-T-C, CADD 1.35
- E30K (p.Glu30Lys), cosmic curated COSV52990
- E30V (p.Glu30Val), gnomAD 19-44948734-A-T, REVEL 0.25, CADD 24.60
- M31T (p.Met31Thr), TOPMed rs1280112768, gnomAD rs1280112768, REVEL 0.14, CADD 0.14
- M31I (p.Met31Ile), gnomAD 19-44948738-G-A, REVEL 0.22, CADD 0.02
- P32S (p.Pro32Ser), TOPMed rs1206463857, REVEL 0.20, CADD 0.01
- S33G (p.Ser33Gly), Ensembl rs1344873637
- S33R (p.Ser33Arg), gnomAD 19-44948795-A-C, CADD 0.54
- P34A (p.Pro34Ala), NCI-TCGA Cosmic COSV5299, NCI-TCGA Cosmic COSV9937, cosmic curated COSV99377, Variant assessed as somatic; moderate impact.
- P34L (p.Pro34Leu), rs200404502, ClinGen CA9506604, ClinVar RCV002367115, ClinVar RCV005019189, REVEL 0.19, CADD 11.10, Uncertain significance, Cardiovascular phenotype; Familial apolipoprotein C-II deficiency
- P34S (p.Pro34Ser), NCI-TCGA Cosmic COSV5299, cosmic curated COSV52991, NCI-TCGA Cosmic COSV9937, Variant assessed as somatic; moderate impact.
- P34T (p.Pro34Thr), cosmic curated COSV10725
- P34P (p.Pro34Pro), rs199658000, gnomAD 19-44948747-G-A, CADD 0.24
- T35I (p.Thr35Ile), gnomAD rs1483358366, REVEL 0.21, CADD 10.10
- T35N (p.Thr35Asn), gnomAD 19-44948749-C-A, REVEL 0.15, CADD 8.81
- T35T (p.Thr35Thr), rs1970350684, gnomAD 19-44948750-C-T, CADD 2.37
- F36L (p.Phe36Leu), Ensembl rs17849977
- L37F (p.Leu37Phe), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- T38A (p.Thr38Ala), gnomAD 19-44948757-A-G, REVEL 0.14, CADD 0.04
- Q39H (p.Gln39His), cosmic curated COSV10804
- Q39K (p.Gln39Lys), gnomAD 19-44948760-C-A, REVEL 0.24, CADD 0.57
- V40L (p.Val40Leu), 1000Genomes rs368487465, ESP rs368487465, ExAC rs368487465, TOPMed rs368487465, REVEL 0.48, CADD 0.05, Uncertain significance, Familial apolipoprotein C-II deficiency
- V40G (p.Val40Gly), gnomAD 19-44948764-T-G, REVEL 0.57, CADD 23.90
- K41T (p.Lys41Thr), rs120074114, ClinGen CA115621, cosmic curated COSV52990, ClinVar RCV000002697, REVEL 0.47, CADD 16.90, Conflicting interpretations, Cardiovascular phenotype; not specified; not provided
- E42D (p.Glu42Asp), gnomAD rs1426808945, REVEL 0.41, CADD 9.67
- E42G (p.Glu42Gly), gnomAD rs1970350981, REVEL 0.32, CADD 20.70
- E42K (p.Glu42Lys), cosmic curated COSV10500
- E42A (p.Glu42Ala), gnomAD 19-44948770-A-C, REVEL 0.43, CADD 19.40
- S43C (p.Ser43Cys), NCI-TCGA Cosmic COSV5298, cosmic curated COSV52989, REVEL 0.52, CADD 21.90, Variant assessed as somatic; moderate impact.
- S43Y (p.Ser43Tyr), cosmic curated COSV10804
- L44V (p.Leu44Val), NCI-TCGA Cosmic COSV9937, cosmic curated COSV99377, Variant assessed as somatic; moderate impact.
- L44P (p.Leu44Pro), gnomAD 19-44948776-T-C, REVEL 0.68, CADD 23.60
- S45F (p.Ser45Phe), Ensembl rs2122210028
- S45Q (p.Ser45Gln), rs1430203751, gnomAD 19-44948771-ATC-A, CADD 22.40
- S46G (p.Ser46Gly), rs2513572741, ClinGen CA406292760, ClinVar RCV004105571, Likely benign, Cardiovascular phenotype
- S46L (p.Ser46Leu), rs892589195, gnomAD 19-44948779-CCA-C, CADD 12.90
- Y47H (p.Tyr47His), gnomAD 19-44948784-T-C, REVEL 0.83, CADD 25.30
- Y47Y (p.Tyr47Tyr), gnomAD 19-44948786-C-T, CADD 6.78
- W48L (p.Trp48Leu), cosmic curated COSV10586, TOPMed rs1168257297, gnomAD rs1168257297, REVEL 0.68, CADD 24.90, Uncertain significance, Familial apolipoprotein C-II deficiency
- W48R (p.Trp48Arg), rs120074115, ClinGen CA115625, ClinVar RCV000002699, ClinVar RCV000002700, REVEL 0.78, CADD 25.10, Pathogenic, APOLIPOPROTEIN C-II (WAKAYAMA); Familial apolipoprotein C-II deficiency
- W48* (p.Trp48Ter), gnomAD 19-44948789-G-A, CADD 39.00
- E49* (p.Glu49Ter), gnomAD 19-44948790-G-T, CADD 37.00
- E49K (p.Glu49Lys), gnomAD 19-44948790-G-A, REVEL 0.17, CADD 20.90
- E49A (p.Glu49Ala), gnomAD 19-44948791-A-C, REVEL 0.14, CADD 17.10
- S50T (p.Ser50Thr), ExAC rs759904322, gnomAD rs759904322, REVEL 0.19, CADD 0.00
- A51V (p.Ala51Val), ExAC rs767857359, gnomAD rs767857359, REVEL 0.75, CADD 23.30
- A51T (p.Ala51Thr), gnomAD 19-44948796-G-A, REVEL 0.78, CADD 24.50
- K52N (p.Lys52Asn), NCI-TCGA Cosmic COSV5299, cosmic curated COSV52990, Variant assessed as somatic; moderate impact.
- T53K (p.Thr53Lys), gnomAD rs1430966275, REVEL 0.27, CADD 4.74
- T53S (p.Thr53Ser), ExAC rs752909963, gnomAD rs752909963, REVEL 0.20, CADD 0.81
- A54G (p.Ala54Gly), 1000Genomes rs761724352, ExAC rs761724352, TOPMed rs761724352, gnomAD rs761724352, REVEL 0.39, CADD 22.20
- A54D (p.Ala54Asp), gnomAD 19-44948806-C-A, REVEL 0.53, CADD 22.10
- A55S (p.Ala55Ser), cosmic curated COSV52990, ExAC rs750370010, TOPMed rs750370010, gnomAD rs750370010, REVEL 0.61, CADD 22.60, Uncertain significance
- A55T (p.Ala55Thr), rs750370010, ClinGen CA9506613, NCI-TCGA Cosmic COSV5299, cosmic curated COSV52990, REVEL 0.63, CADD 21.50, Uncertain significance, Cardiovascular phenotype; Familial apolipoprotein C-II deficiency
- A55D (p.Ala55Asp), gnomAD 19-44948809-C-A, REVEL 0.74, CADD 22.60
- N57D (p.Asn57Asp), cosmic curated COSV52990
- L58M (p.Leu58Met), cosmic curated COSV10804, MetaLR 0.73, MetaSVM -0.06
- L58Q (p.Leu58Gln), ExAC rs779492201, gnomAD rs779492201, REVEL 0.69, CADD 23.70
- Y59* (p.Tyr59Ter), rs120074111, ClinGen CA115616, ClinVar RCV000002683, ClinVar RCV000002684, CADD 35.00, Pathogenic
- E60K (p.Glu60Lys), rs5122, ClinGen CA115623, cosmic curated COSV10457, ClinVar RCV000002698, REVEL 0.26, CADD 0.51, Benign/Likely benign, Cardiovascular phenotype; not provided
- E60T (p.Glu60Thr), NCI-TCGA TCGA novel, Variant assessed as somatic; high impact., in San Francisco
- E60V (p.Glu60Val), rs2513572806, ClinGen CA406294501, ClinVar RCV004165394, Uncertain significance, Cardiovascular phenotype
- E60* (p.Glu60Ter), gnomAD 19-44948823-G-T, CADD 33.00
- E60Q (p.Glu60Gln), gnomAD 19-44948823-G-C, REVEL 0.16, CADD 0.09
- K61T (p.Lys61Thr), gnomAD 19-44948827-A-C, REVEL 0.31, CADD 21.10
- K61N (p.Lys61Asn), gnomAD 19-44948828-G-C, REVEL 0.16, CADD 9.82
- T62A (p.Thr62Ala), gnomAD 19-44948829-A-G, REVEL 0.12, CADD 10.30
- T62S (p.Thr62Ser), gnomAD 19-44948829-A-T, REVEL 0.26, CADD 9.89
- Y63* (p.Tyr63Ter), rs754423238, ClinGen CA406294586, ClinVar RCV000784907, ExAC rs754423238, CADD 35.00, Pathogenic
- Y63H (p.Tyr63His), Ensembl rs959736411, REVEL 0.23, CADD 14.90
- Y63N (p.Tyr63Asn), Ensembl rs959736411, REVEL 0.32, CADD 16.40
- Y63S (p.Tyr63Ser), Ensembl rs1599993396
- Y63F (p.Tyr63Phe), gnomAD 19-44948833-A-T, REVEL 0.40, CADD 17.00
- P65H (p.Pro65His), Ensembl rs1970351799
- P65L (p.Pro65Leu), cosmic curated COSV10457
- P65S (p.Pro65Ser), rs1970351768, ClinGen CA406294639, cosmic curated COSV52990, ClinVar RCV003377764, AlphaMissense 0.27, Uncertain significance, Cardiovascular phenotype
- A66D (p.Ala66Asp), NCI-TCGA Cosmic COSV5299, Variant assessed as somatic; moderate impact.
- A66P (p.Ala66Pro), rs770092327, ClinGen CA406294671, ClinVar RCV004417826, ClinVar RCV005023527, AlphaMissense 0.08, MetaLR 0.21, Uncertain significance, Familial apolipoprotein C-II deficiency; Cardiovascular phenotype
- A66T (p.Ala66Thr), rs770092327, ClinGen CA9506620, ClinVar RCV004518527, ExAC rs770092327, REVEL 0.11, AlphaMissense 0.08, Likely benign, Cardiovascular phenotype
- A66V (p.Ala66Val), cosmic curated COSV52990, MetaLR 0.39, MetaSVM -0.75
- A66C (p.Ala66Cys), rs751214954, gnomAD 19-44948839-CCG-C, CADD 22.50
- V67I (p.Val67Ile), rs778175608, ClinGen CA9506621, ClinVar RCV002417071, ClinVar RCV003100994, REVEL 0.26, CADD 0.31, Uncertain significance, not provided; Cardiovascular phenotype
- V67L (p.Val67Leu), ExAC rs778175608, TOPMed rs778175608, gnomAD rs778175608, Uncertain significance
- V67V (p.Val67Val), rs1463289569, gnomAD 19-44948846-A-C, CADD 5.88
- D68Y (p.Asp68Tyr), cosmic curated COSV52990, MetaLR 0.74, MetaSVM 0.03
- D68H (p.Asp68His), gnomAD 19-44948847-G-C, REVEL 0.54, CADD 24.80
- D68N (p.Asp68Asn), gnomAD 19-44948847-G-A, REVEL 0.35, CADD 21.90
- E69* (p.Glu69Ter), 1000Genomes rs148445956, ESP rs148445956, ExAC rs148445956, TOPMed rs148445956, CADD 44.00, Uncertain significance
- E69K (p.Glu69Lys), rs148445956, ClinGen CA308875910, ClinVar RCV002721160, 1000Genomes rs148445956, REVEL 0.75, CADD 26.00, Uncertain significance, not provided
- K70T (p.Lys70Thr), gnomAD rs1389949448, MetaLR 0.39, MetaSVM -0.56
- R72K (p.Arg72Lys), gnomAD rs1475941193, REVEL 0.51, AlphaMissense 0.32
- R72T (p.Arg72Thr), rs1475941193, ClinGen CA406294878, ClinVar RCV003560122, AlphaMissense 0.32, MetaLR 0.58, Uncertain significance, not provided
- R72* (p.Arg72Ter), rs120074111, gnomAD 19-44948822-C-T, CADD 4.94
- R72C (p.Arg72Cys), rs145771233, gnomAD 19-44948840-C-T, CADD 3.50
- R72S (p.Arg72Ser), rs145771233, gnomAD 19-44948840-C-A, CADD 2.82
- R72G (p.Arg72Gly), rs145771233, gnomAD 19-44948840-C-G, CADD 3.01
- D73H (p.Asp73His), ExAC rs757506929, gnomAD rs757506929, REVEL 0.73, CADD 24.90
- D73N (p.Asp73Asn), ExAC rs757506929, gnomAD rs757506929, REVEL 0.57, CADD 26.40
- D73E (p.Asp73Glu), gnomAD 19-44949162-C-G, REVEL 0.54, CADD 17.20
- L74L (p.Leu74Leu), gnomAD 19-44949163-T-C, CADD 6.86
- Y75H (p.Tyr75His), TOPMed rs1339593526, gnomAD rs1339593526, REVEL 0.81, CADD 28.90
- Y75S (p.Tyr75Ser), gnomAD 19-44949167-A-C, REVEL 0.73, CADD 26.40
- Y75Y (p.Tyr75Tyr), rs1970357151, gnomAD 19-44949168-C-T, CADD 14.00
- S76N (p.Ser76Asn), gnomAD 19-44949170-G-A, REVEL 0.29, CADD 11.20
- S76I (p.Ser76Ile), gnomAD 19-44949170-G-T, REVEL 0.60, CADD 22.20
- S76R (p.Ser76Arg), gnomAD 19-44949171-C-A, REVEL 0.66, CADD 23.90
- K77Q (p.Lys77Gln), rs5126, ClinGen CA115614, ClinVar RCV000002682, ClinVar RCV000974450, REVEL 0.34, CADD 15.40, Benign/Likely benign, not specified; Cardiovascular phenotype; Familial apolipoprotein C-II deficiency
- K77R (p.Lys77Arg), gnomAD rs1295045282, REVEL 0.41, CADD 23.40, Uncertain significance, Cardiovascular phenotype
- S78G (p.Ser78Gly), Ensembl rs1970357293, REVEL 0.16, CADD 13.90
- S78N (p.Ser78Asn), rs2513573369, ClinGen CA406295163, ClinVar RCV004518528, Uncertain significance, Cardiovascular phenotype
- T79H (p.Thr79His), gnomAD 19-44949174-AAGCA, CADD 33.00
Public APOC2 analysis runs
- APOC2 analysis run — APOC2 (240 variants) — completed 2026-08-20