SERPINC1 (Antithrombin-III) variants and mutations
SERPINC1 (also known as Antithrombin-III) is a human protein-coding gene encoding an antithrombin-III protein. It neutralizes thrombin and several activated coagulation proteases and is greatly accelerated by heparin-like molecules. Heterozygous deficiency causes a strong inherited predisposition to venous thrombosis and can reduce responsiveness to heparin. This analysis covers 844 SERPINC1 variants and mutations. Of these, 84% have computational variant effect predictions. Disease context includes hereditary antithrombin deficiency, Reduced antithrombin III activity, and Venous thrombosis. Example SERPINC1 variants include M1I, Y2*, and Y2H.
Variant analysis overview
- Gene: SERPINC1
- Protein: Antithrombin-III
- UniProt accession: P01008
- Organism: Homo sapiens
- Variants analyzed: 844
- Variant scope: all variants
- Completed: 2026-08-19
Variant and mutation evidence
- Variant composition: 599 unspecified-consequence records; 5 frameshift variants; 121 synonymous variants; 101 missense variants; 1 in-frame insertions; 1 stop-gained variants; 5 splice-region variants; 1 in-frame deletions; 9 substitution
- Prediction scores: 707 variants have prediction scores (84% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: hereditary antithrombin deficiency, Reduced antithrombin III activity, Venous thrombosis, venous thromboembolism, deep vein thrombosis, blood coagulation disease, pulmonary embolism, atrial fibrillation, myocardial infarction, Recurrent thrombophlebitis, angina unstable, Thromboembolism.
Protein structure and variant hotspots
- Protein features: 3 binding sites; 6 post-translational modification sites.
- PTM context: 8 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable SERPINC1 variants
Examples include M1I, Y2*, Y2H, S3F, N4S, N4T, V5A, V5M. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- M1I (p.Met1Ile), rs777886588, []
- Y2* (p.Tyr2Ter), Ensembl rs199469506
- Y2H (p.Tyr2His), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- S3F (p.Ser3Phe), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, Variant assessed as somatic; moderate impact.
- N4S (p.Asn4Ser), TOPMed rs1393755038, gnomAD rs1393755038, REVEL 0.23, CADD 0.00
- N4T (p.Asn4Thr), TOPMed rs1393755038, gnomAD rs1393755038, REVEL 0.30, CADD 0.00
- V5A (p.Val5Ala), ExAC rs748072934, gnomAD rs748072934, REVEL 0.17, CADD 0.18
- V5M (p.Val5Met), cosmic curated COSV62929, TOPMed rs750709130, gnomAD rs750709130, REVEL 0.20, CADD 8.38, Uncertain significance, Hereditary antithrombin deficiency; Inborn genetic diseases
- I6K (p.Ile6Lys), ExAC rs753713846, TOPMed rs753713846, gnomAD rs753713846, REVEL 0.37, CADD 0.36, Uncertain significance
- I6T (p.Ile6Thr), rs753713846, ClinGen CA1251495, ClinVar RCV002868340, ClinVar RCV004823125, REVEL 0.25, CADD 0.35, Uncertain significance, Hereditary antithrombin deficiency
- T8I (p.Thr8Ile), gnomAD rs1658031380, REVEL 0.29, CADD 5.55
- V9I (p.Val9Ile), ExAC rs779790099, TOPMed rs779790099, gnomAD rs779790099, REVEL 0.16, CADD 2.37
- V9L (p.Val9Leu), NCI-TCGA Cosmic COSV6293, cosmic curated COSV62930, Variant assessed as somatic; moderate impact.
- T10A (p.Thr10Ala), Ensembl rs967432692, REVEL 0.21, CADD 2.17, Uncertain significance, Hereditary antithrombin deficiency
- T10N (p.Thr10Asn), rs2526612854, ClinGen CA2580061386, ClinVar RCV002648224, REVEL 0.14, CADD 12.20, Likely benign, Hereditary antithrombin deficiency
- S11F (p.Ser11Phe), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, Variant assessed as somatic; moderate impact.
- S11T (p.Ser11Thr), rs1445653081, ClinGen CA343779044, ClinVar RCV001210419, TOPMed rs1445653081, REVEL 0.11, CADD 0.44, Uncertain significance, Hereditary antithrombin deficiency
- G12* (p.Gly12Ter), NCI-TCGA TCGA novel, Variant assessed as somatic; high impact.
- G12A (p.Gly12Ala), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, Variant assessed as somatic; moderate impact.
- G12E (p.Gly12Glu), rs1202691195, cosmic curated COSV10528, NCI-TCGA Cosmic COSV6292, TOPMed rs1202691195, REVEL 0.30, CADD 12.60, Variant assessed as somatic; moderate impact.
- V16A (p.Val16Ala), rs531137446, ClinGen CA1251475, ClinVar RCV001101593, ExAC rs531137446, REVEL 0.15, CADD 2.27, Likely benign, Hereditary antithrombin deficiency
- V16I (p.Val16Ile), Ensembl rs986804201, REVEL 0.14, CADD 1.32, Uncertain significance, Hereditary antithrombin deficiency
- Y17C (p.Tyr17Cys), ExAC rs780733720, gnomAD rs780733720, REVEL 0.27, CADD 4.72
- Y17S (p.Tyr17Ser), UniProt VAR 027450, Pathogenic, in AT3D
- S20F (p.Ser20Phe), ESP rs369828221, ExAC rs369828221, TOPMed rs369828221, gnomAD rs369828221, REVEL 0.21, CADD 14.50
- L21F (p.Leu21Phe), Ensembl rs2102790362
- L23F (p.Leu23Phe), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62928, REVEL 0.48, CADD 19.30, Variant assessed as somatic; moderate impact., in AT3D
- L23P (p.Leu23Pro), rs387906575, ClinGen CA210793, ClinVar RCV000019656, UniProt VAR 012748, AlphaMissense 0.25, MetaLR 0.63, Pathogenic, in AT3D
- I24F (p.Ile24Phe), TOPMed rs1657927664
- I24T (p.Ile24Thr), gnomAD rs1211286118, REVEL 0.21, CADD 12.40
- G25D (p.Gly25Asp), rs1657927385, ClinGen CA343778502, ClinVar RCV003389114, TOPMed rs1657927385, AlphaMissense 0.32, MetaLR 0.56, Uncertain significance, Hereditary antithrombin deficiency
- W27R (p.Trp27Arg), rs1165816584, ClinGen CA343778485, NCI-TCGA Cosmic COSV6292, NCI-TCGA Cosmic COSV6293, REVEL 0.69, CADD 24.70, Uncertain significance, Hereditary antithrombin deficiency
- D28N (p.Asp28Asn), TOPMed rs1657927039
- C29R (p.Cys29Arg), Ensembl rs1233588688
- C29S (p.Cys29Ser), Ensembl rs1557904316
- V30E (p.Val30Glu), rs2227624, ClinGen CA325653, ClinVar RCV000019628, ClinVar RCV000852239, REVEL 0.46, CADD 15.90, Pathogenic, in Dublin
- V30M (p.Val30Met), rs532883680, ClinGen CA1251470, cosmic curated COSV62928, ClinVar RCV003819117, REVEL 0.25, CADD 6.80, Uncertain significance, Hereditary antithrombin deficiency
- T31I (p.Thr31Ile), Ensembl rs1657925990, REVEL 0.18, CADD 5.00
- C32R (p.Cys32Arg), UniProt VAR 027451, Pathogenic, in AT3D
- H33Q (p.His33Gln), ESP rs147676453, ExAC rs147676453, TOPMed rs147676453, gnomAD rs147676453, REVEL 0.26, CADD 0.00, Likely benign
- G34R (p.Gly34Arg), rs773254902, ClinGen CA1251467, ClinVar RCV001733512, ExAC rs773254902, REVEL 0.12, CADD 1.63, Uncertain significance, Hereditary antithrombin deficiency
- S35N (p.Ser35Asn), Ensembl rs1657925173
- P36S (p.Pro36Ser), TOPMed rs1173535550, gnomAD rs1173535550, REVEL 0.27, CADD 14.00
- V37G (p.Val37Gly), Ensembl rs1657924786, REVEL 0.24, CADD 16.50
- D38H (p.Asp38His), ESP rs145771113, ExAC rs145771113, TOPMed rs145771113, gnomAD rs145771113, REVEL 0.48, CADD 24.10
- D38N (p.Asp38Asn), ESP rs145771113, ExAC rs145771113, TOPMed rs145771113, gnomAD rs145771113, REVEL 0.37, CADD 22.90
- I39L (p.Ile39Leu), Ensembl rs1657924174
- I39N (p.Ile39Asn), rs121909558, ClinGen CA210770, ClinVar RCV000019637, UniProt VAR 007033, AlphaMissense 0.33, MetaLR 0.67, Likely pathogenic, Hereditary antithrombin deficiency
- I39T (p.Ile39Thr), rs121909558, ClinGen CA343778339, ClinVar RCV002074468, Ensembl rs121909558, AlphaMissense 0.33, MetaLR 0.67, Uncertain significance, Hereditary antithrombin deficiency
- C40R (p.Cys40Arg), TOPMed rs1307013919, gnomAD rs1307013919, REVEL 0.83, CADD 27.20, Likely pathogenic, Hereditary antithrombin deficiency
- C40Y (p.Cys40Tyr), NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, Variant assessed as somatic; moderate impact.
- T41I (p.Thr41Ile), Ensembl rs1657923740
- A42G (p.Ala42Gly), Ensembl rs1657923555
- A42T (p.Ala42Thr), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- K43N (p.Lys43Asn), rs761729771, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, ExAC rs761729771, REVEL 0.63, CADD 24.20, Variant assessed as somatic; moderate impact.
- P44L (p.Pro44Leu), gnomAD rs1291914956, REVEL 0.76, CADD 27.70
- R45Q (p.Arg45Gln), ExAC rs749308643, gnomAD rs749308643, REVEL 0.47, CADD 25.40
- R45W (p.Arg45Trp), rs768704768, ClinGen CA1251463, ClinVar RCV001801304, ExAC rs768704768, REVEL 0.69, CADD 26.60, Pathogenic/Likely pathogenic, Hereditary antithrombin deficiency
- D46N (p.Asp46Asn), Ensembl rs1657922481, REVEL 0.48, CADD 25.10
- P48H (p.Pro48His), Ensembl rs1657921983, REVEL 0.71, CADD 27.80
- P48S (p.Pro48Ser), rs769761264, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, ExAC rs769761264, REVEL 0.52, CADD 23.60, Variant assessed as somatic; moderate impact.
- M49I (p.Met49Ile), NCI-TCGA Cosmic COSV6293, cosmic curated COSV62930, Variant assessed as somatic; moderate impact.
- M49T (p.Met49Thr), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- M49V (p.Met49Val), gnomAD rs1199990064, REVEL 0.17, CADD 2.85, Likely benign, Inborn genetic diseases
- N50D (p.Asn50Asp), gnomAD rs1433461494, REVEL 0.32, CADD 22.30
- P51L (p.Pro51Leu), ExAC rs745698642, gnomAD rs745698642, REVEL 0.77, CADD 29.10
- P51S (p.Pro51Ser), TOPMed rs1657921607, gnomAD rs1657921607, REVEL 0.66, CADD 27.10
- M52K (p.Met52Lys), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- M52L (p.Met52Leu), Ensembl rs1657921360
- M52T (p.Met52Thr), rs892712171, UniProt VAR 007034, TOPMed rs892712171, gnomAD rs892712171, REVEL 0.47, CADD 23.00, Benign
- C53* (p.Cys53Ter), rs1572092099, ClinGen CA343778180, ClinVar RCV000852038, ClinVar RCV004792444, CADD 34.00, Pathogenic, in AT3D
- C53F (p.Cys53Phe), UniProt VAR 071199, Uncertain significance, not provided
- I54L (p.Ile54Leu), ExAC rs780670128, TOPMed rs780670128, gnomAD rs780670128, REVEL 0.41, CADD 23.40
- I54M (p.Ile54Met), ExAC rs756940594, TOPMed rs756940594, gnomAD rs756940594, REVEL 0.49, CADD 23.50, Uncertain significance, Inborn genetic diseases
- I54V (p.Ile54Val), rs780670128, NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, ExAC rs780670128, REVEL 0.19, CADD 19.90, Variant assessed as somatic; moderate impact.
- Y55H (p.Tyr55His), Ensembl rs1572092092, Uncertain significance, not specified
- R56C (p.Arg56Cys), rs28929469, ClinGen CA210772, NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, REVEL 0.78, CADD 31.00, Pathogenic/Likely pathogenic, not provided; Hereditary antithrombin deficiency
- R56H (p.Arg56His), cosmic curated COSV62929, ExAC rs777405542, TOPMed rs777405542, gnomAD rs777405542, REVEL 0.61, CADD 27.90
- R56L (p.Arg56Leu), ExAC rs777405542, TOPMed rs777405542, gnomAD rs777405542
- P58L (p.Pro58Leu), 1000Genomes rs550247582, ExAC rs550247582, TOPMed rs550247582, gnomAD rs550247582, REVEL 0.53, CADD 25.70
- P58R (p.Pro58Arg), 1000Genomes rs550247582, ExAC rs550247582, TOPMed rs550247582, gnomAD rs550247582
- E59G (p.Glu59Gly), NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, Ensembl rs1572092063, Variant assessed as somatic; moderate impact.
- E59K (p.Glu59Lys), cosmic curated COSV10528, NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- E64* (p.Glu64Ter), rs2526595830, ClinGen CA2649174715, ClinVar RCV003944099, CADD 25.40, Likely pathogenic
- D65E (p.Asp65Glu), Ensembl rs1572092042
- D65N (p.Asp65Asn), TOPMed rs936295966, gnomAD rs936295966, REVEL 0.18, CADD 17.30
- E66D (p.Glu66Asp), Ensembl rs1572092031
- G67D (p.Gly67Asp), Ensembl rs1657918374, REVEL 0.30, CADD 14.00
- E69* (p.Glu69Ter), rs2526595697, ClinGen CA343778005, ClinVar RCV003639540, Pathogenic
- E69G (p.Glu69Gly), cosmic curated COSV62929, ESP rs377500819, ExAC rs377500819, TOPMed rs377500819, REVEL 0.14, CADD 22.90
- E69V (p.Glu69Val), ESP rs377500819, ExAC rs377500819, TOPMed rs377500819, gnomAD rs377500819, REVEL 0.17, CADD 22.80, Uncertain significance, Hereditary antithrombin deficiency
- Q70R (p.Gln70Arg), TOPMed rs1050200480, gnomAD rs1050200480, REVEL 0.15, CADD 17.40
- K71* (p.Lys71Ter), Ensembl rs199469505
- K71N (p.Lys71Asn), TOPMed rs1657917473
- I72V (p.Ile72Val), Ensembl rs1572091985
- P73L (p.Pro73Leu), rs121909551, ClinGen CA210756, cosmic curated COSV10467, ClinVar RCV000019627, REVEL 0.66, CADD 28.40, Pathogenic, Hereditary antithrombin deficiency
- P73S (p.Pro73Ser), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, REVEL 0.52, CADD 26.70, Variant assessed as somatic; moderate impact., in AT3D
- A75T (p.Ala75Thr), rs1297895835, ClinGen CA343777896, ClinVar RCV002821497, ClinVar RCV004732497, REVEL 0.21, CADD 21.80, Uncertain significance, Hereditary antithrombin deficiency
- T76I (p.Thr76Ile), TOPMed rs948537396, gnomAD rs948537396, REVEL 0.54, CADD 26.70
- T76S (p.Thr76Ser), TOPMed rs948537396, gnomAD rs948537396, REVEL 0.55, CADD 25.50
- N77D (p.Asn77Asp), Ensembl rs2102789923
- R78Q (p.Arg78Gln), rs774294043, ClinGen CA1251448, NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, REVEL 0.34, CADD 21.20, Uncertain significance, Hereditary antithrombin deficiency
- R78W (p.Arg78Trp), rs374205395, cosmic curated COSV62930, ESP rs374205395, ExAC rs374205395, REVEL 0.55, CADD 29.20, Variant assessed as somatic; moderate impact.
- R79C (p.Arg79Cys), rs121909547, ClinGen CA210748, cosmic curated COSV62930, ClinVar RCV000019620, REVEL 0.74, AlphaMissense 0.98, Pathogenic, Hereditary antithrombin deficiency
- R79H (p.Arg79His), rs121909552, ClinGen CA210758, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62930, REVEL 0.70, CADD 23.90, Pathogenic, Hereditary antithrombin deficiency
- R79S (p.Arg79Ser), rs121909547, ClinGen CA210760, ClinVar RCV000019631, UniProt VAR 007039, AlphaMissense 0.98, MetaLR 0.66, Likely pathogenic, Hereditary antithrombin deficiency
- V80S (p.Val80Ser), NCI-TCGA TCGA novel, Variant assessed as somatic; high impact.
- W81* (p.Trp81Ter), rs2526595268, ClinGen CA343777815, ClinVar RCV002572012, Pathogenic
- E82* (p.Glu82Ter), rs1557904209, ClinGen CA343777805, ClinVar RCV000761687, TOPMed rs1557904209, AlphaMissense 0.87, MetaLR 0.65, Likely pathogenic
- E82K (p.Glu82Lys), TOPMed rs1557904209, REVEL 0.69, AlphaMissense 0.87, Likely pathogenic
- E82Q (p.Glu82Gln), TOPMed rs1557904209, Likely pathogenic
- S84P (p.Ser84Pro), TOPMed rs1180794147, gnomAD rs1180794147, REVEL 0.85, CADD 27.20
- N87S (p.Asn87Ser), rs2102789848, ClinGen CA343777746, cosmic curated COSV62930, ClinVar RCV001984875, REVEL 0.69, CADD 26.30, Uncertain significance, Hereditary antithrombin deficiency
- S88C (p.Ser88Cys), ExAC rs775520108, gnomAD rs775520108, REVEL 0.61, CADD 26.90
- S88Y (p.Ser88Tyr), cosmic curated COSV10591, ExAC rs775520108, gnomAD rs775520108, REVEL 0.67, CADD 26.60
- R89A (p.Arg89Ala), rs2526594990, ClinVar RCV004577662, Uncertain significance, Hereditary antithrombin deficiency
- R89C (p.Arg89Cys), rs147266200, UniProt VAR 007041, 1000Genomes rs147266200, ExAC rs147266200, REVEL 0.70, CADD 28.60, Pathogenic, in AT3D
- R89H (p.Arg89His), rs745583962, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, REVEL 0.21, CADD 17.10, Variant assessed as somatic; moderate impact., in AT3D
- R89L (p.Arg89Leu), cosmic curated COSV62929, ExAC rs745583962, TOPMed rs745583962, gnomAD rs745583962, REVEL 0.51, CADD 20.90, Uncertain significance, Hereditary antithrombin deficiency
- F90C (p.Phe90Cys), rs2526594931, ClinGen CA343777713, ClinVar RCV003112098, Uncertain significance, Hereditary antithrombin deficiency
- F90L (p.Phe90Leu), UniProt VAR 007042, Pathogenic, in AT3D
- A91V (p.Ala91Val), rs2526594923, NCI-TCGA Cosmic COSV6293, cosmic curated COSV62930, ClinGen CA343777700, Likely pathogenic, Hereditary antithrombin deficiency
- T92S (p.Thr92Ser), gnomAD rs1253973125, REVEL 0.30, CADD 23.30
- T93P (p.Thr93Pro), NCI-TCGA Cosmic COSV6293, cosmic curated COSV62930, Variant assessed as somatic; moderate impact.
- Y95C (p.Tyr95Cys), rs907768931, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, UniProt VAR 027452, REVEL 0.92, CADD 29.00, Likely pathogenic, Hereditary antithrombin deficiency
- Y95H (p.Tyr95His), rs1657913203, ClinGen CA343777661, ClinVar RCV001298024, Ensembl rs1657913203, AlphaMissense 0.82, MetaLR 0.78, Likely pathogenic, Hereditary antithrombin deficiency
- Y95S (p.Tyr95Ser), UniProt VAR 012316, Pathogenic, in AT3D
- Q96H (p.Gln96His), cosmic curated COSV10969, NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- Q96K (p.Gln96Lys), Ensembl rs1657912814
- Q96R (p.Gln96Arg), TOPMed rs1477930440
- L98P (p.Leu98Pro), UniProt VAR 027453, REVEL 0.93, CADD 29.50, Pathogenic, in AT3D
- A99E (p.Ala99Glu), rs2102789784, ClinGen CA343777610, cosmic curated COSV10890, ClinVar RCV001885486, AlphaMissense 0.66, MetaLR 0.77, Uncertain significance, Hereditary antithrombin deficiency
- D100G (p.Asp100Gly), rs369524182, ClinGen CA1251444, cosmic curated COSV10820, ClinVar RCV000786221, REVEL 0.29, CADD 23.20, Likely benign, Hereditary antithrombin deficiency
- D100Y (p.Asp100Tyr), NCI-TCGA Cosmic COSV6293, cosmic curated COSV62931, Variant assessed as somatic; moderate impact.
- S101C (p.Ser101Cys), 1000Genomes rs199895690, ExAC rs199895690, TOPMed rs199895690, gnomAD rs199895690, REVEL 0.55, CADD 23.40
- S101F (p.Ser101Phe), rs199895690, NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, 1000Genomes rs199895690, REVEL 0.41, CADD 21.90, Variant assessed as somatic; moderate impact.
- K102E (p.Lys102Glu), gnomAD rs1287865349, REVEL 0.55, CADD 26.80
- K102M (p.Lys102Met), TOPMed rs933978627, gnomAD rs933978627, REVEL 0.77, CADD 27.10
- D104E (p.Asp104Glu), gnomAD rs1657911519, REVEL 0.25, CADD 15.80
- D104V (p.Asp104Val), ExAC rs200118419, gnomAD rs200118419, REVEL 0.27, CADD 20.40
- N105H (p.Asn105His), TOPMed rs1335457606, gnomAD rs1335457606, REVEL 0.22, CADD 21.50
- N105K (p.Asn105Lys), ExAC rs778100368, gnomAD rs778100368
- N105S (p.Asn105Ser), ExAC rs757851817, gnomAD rs757851817, REVEL 0.06, CADD 10.60, Uncertain significance, Inborn genetic diseases
- D106N (p.Asp106Asn), gnomAD rs1280660055, REVEL 0.26, CADD 25.30
- D106V (p.Asp106Val), TOPMed rs1452345419, gnomAD rs1452345419, REVEL 0.49, CADD 25.90
- N107D (p.Asn107Asp), gnomAD rs1458529321, REVEL 0.85, CADD 26.90
- I108V (p.Ile108Val), Ensembl rs921356636
- L110M (p.Leu110Met), gnomAD rs1412230387, REVEL 0.19, CADD 19.80
- S111P (p.Ser111Pro), rs2526594315, ClinGen CA343777474, ClinVar RCV002791695, Uncertain significance, Hereditary antithrombin deficiency
- P112S (p.Pro112Ser), UniProt VAR 086227, Pathogenic, in AT3D
- P112T (p.Pro112Thr), UniProt VAR 007044, REVEL 0.98, CADD 26.80, Pathogenic, in AT3D
- S114N (p.Ser114Asn), rs1657909645, ClinGen CA343777442, ClinVar RCV001045955, Ensembl rs1657909645, AlphaMissense 0.92, MetaLR 0.89, Pathogenic, Hereditary antithrombin deficiency
- T117M (p.Thr117Met), ESP rs139392083, ExAC rs139392083, gnomAD rs139392083, REVEL 0.79, CADD 28.10
- A118T (p.Ala118Thr), NCI-TCGA Cosmic COSV6292, cosmic curated COSV62929, Variant assessed as somatic; moderate impact.
- M121I (p.Met121Ile), rs371222224, ClinGen CA1251434, ClinVar RCV000798956, ESP rs371222224, REVEL 0.83, CADD 26.20, Uncertain significance, Hereditary antithrombin deficiency
- M121K (p.Met121Lys), UniProt VAR 027454, Pathogenic, in AT3D
- T122I (p.Thr122Ile), gnomAD rs1253864431, REVEL 0.63, AlphaMissense 0.68, Uncertain significance
- T122N (p.Thr122Asn), rs1253864431, ClinGen CA343777345, ClinVar RCV002245322, gnomAD rs1253864431, AlphaMissense 0.68, MetaLR 0.49, Uncertain significance, Hereditary antithrombin deficiency
- K123N (p.Lys123Asn), Ensembl rs1572091801
- K123R (p.Lys123Arg), gnomAD rs1288553458, REVEL 0.58, CADD 25.00
- L124Q (p.Leu124Gln), NCI-TCGA Cosmic COSV1008, cosmic curated COSV10087, Variant assessed as somatic; moderate impact.
- G125C (p.Gly125Cys), rs2526594015, ClinGen CA343777312, ClinVar RCV002284323, Likely pathogenic, not provided
- G125D (p.Gly125Asp), rs2526594003, ClinGen CA343777309, ClinVar RCV003639154, UniProt VAR 071200, REVEL 0.93, CADD 26.50, Pathogenic, Hereditary antithrombin deficiency
- C127* (p.Cys127Ter), rs2102789590, ClinGen CA343777287, ClinVar RCV001984533, Ensembl rs2102789590, Pathogenic, in AT3D
- C127R (p.Cys127Arg), rs121909573, ClinGen CA210802, ClinVar RCV000019660, UniProt VAR 027455, AlphaMissense 0.91, MetaLR 0.28, Pathogenic, Hereditary antithrombin deficiency
- C127Y (p.Cys127Tyr), NCI-TCGA TCGA novel, TOPMed rs1657908172, gnomAD rs1657908172, REVEL 0.79, CADD 26.90, Variant assessed as somatic; moderate impact., in AT3D
- N128Y (p.Asn128Tyr), rs1657908048, ClinGen CA343777281, ClinVar RCV002245321, gnomAD rs1657908048, REVEL 0.62, CADD 23.60, Likely pathogenic, Hereditary antithrombin deficiency
- T130I (p.Thr130Ile), Ensembl rs1657907675, Pathogenic, Hereditary antithrombin deficiency
- T130P (p.Thr130Pro), Ensembl rs1572091795
- L131F (p.Leu131Phe), rs121909567, ClinGen CA210787, ClinVar RCV000019650, ClinVar RCV000851769, REVEL 0.85, AlphaMissense 0.79, Pathogenic, Hereditary antithrombin deficiency
- L131V (p.Leu131Val), rs121909567, ClinVar RCV004577659, UniProt VAR 007046, AlphaMissense 0.79, MetaLR 0.78, Uncertain significance, Hereditary antithrombin deficiency
- Q132H (p.Gln132His), TOPMed rs1657906967, REVEL 0.37, CADD 23.40
- Q132R (p.Gln132Arg), TOPMed rs1657907168, REVEL 0.27, CADD 22.30
- Q133H (p.Gln133His), rs878854019, ClinGen CA10581758, ClinVar RCV000226993, Ensembl rs878854019, AlphaMissense 0.84, MetaLR 0.53, Uncertain significance, Hereditary antithrombin deficiency
- Q133K (p.Gln133Lys), rs1411331203, UniProt VAR 007047, gnomAD rs1411331203, REVEL 0.83, CADD 24.70, Pathogenic, in AT3D
- M135L (p.Met135Leu), gnomAD rs1657906212, REVEL 0.46, CADD 23.00
- V137A (p.Val137Ala), rs1657792806, ClinGen CA343776881, ClinVar RCV001212288, Ensembl rs1657792806, AlphaMissense 0.58, MetaLR 0.49, Uncertain significance, Hereditary antithrombin deficiency
- V137I (p.Val137Ile), gnomAD rs1657792931, REVEL 0.58, CADD 32.00
- K139E (p.Lys139Glu), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- D141V (p.Asp141Val), ExAC rs746430769, gnomAD rs746430769
Public SERPINC1 analysis runs
- SERPINC1 analysis run — SERPINC1 (844 variants) — completed 2026-08-19