R15T (p.Arg15Thr) variant of PTEN (P60484)
R15T (p.Arg15Thr) in PTEN (P60484) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as likely pathogenic in the context of PTEN hamartoma tumor syndrome. The available variant effect predictions contribute to a CATVariant prioritization score of 0.82 / 1. The record also includes experimental measurements, published literature, and structural context.
R15T (p.Arg15Thr) variant details
- p.Arg15Thr
- rs398123324
- ClinGen CA377781931
- NCI-TCGA Cosmic COSV1009
- NCI-TCGA Cosmic COSV6429
- Likely pathogenic
- PTEN hamartoma tumor syndrome
- Missense
- Variant Prioritization Score for Impact Estimate 0.816
- ESM-1b 1.00
- AlphaMissense 1.00
- MetaLR 0.86
- MetaSVM 0.74
- PolyPhen-2 0.00
- SIFT 0.00
- ClinVar: Likely pathogenic (PTEN hamartoma tumor syndrome)
- EBI: Likely pathogenic (in CWS1)
- UniProt: Likely pathogenic (in CWS1)
- Structural context available
- PTEN VAMP-seq Fill-in: score 1.65
- Cited in: A practice guideline from the American College of Medical Genetics and Genomics and the National Society of Genetic… (PMID 25394175)
- Cited in: American Cancer Society guidelines for breast screening with MRI as an adjunct to mammography. (PMID 17392385)