K53M (p.Lys53Met) variant of LRRK2 (Q5S007)
K53M (p.Lys53Met) in LRRK2 (Q5S007) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as uncertain significance in the context of Inborn genetic diseases. The available variant effect predictions contribute to a CATVariant prioritization score of 0.20 / 1. The record also includes population frequency data, published literature, and structural context.
K53M (p.Lys53Met) variant details
- p.Lys53Met
- rs202157354
- ClinGen CA384398948
- ClinVar RCV002398393
- 1000Genomes rs202157354
- Uncertain significance
- Inborn genetic diseases
- Missense
- Variant Prioritization Score for Impact Estimate 0.199
- REVEL 0.06
- MetaLR 0.09
- MetaSVM -1.02
- CADD 22.80
- PolyPhen-2 0.19
- SIFT 0.04
- ClinVar: Uncertain significance (Inborn genetic diseases)
- EBI: Variant of uncertain significance
- UniProt: Uncertain significance
- Most common in the Non-Finnish European population (allele frequency 5e-05)
- Structural context available
- Cited in: Specific guidelines for assessing and improving the methodological quality of economic evaluations of newborn screening. (PMID 22947299)
- Cited in: Including the initial newborn screening bloodspot collection device serial number on birth certificates: basis and… (PMID 23037933)