M1I (p.Met1Ile) variant of GAA (Lysosomal alpha-glucosidase)
M1I (p.Met1Ile) in GAA (Lysosomal alpha-glucosidase) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as likely pathogenic in the context of Glycogen storage disease, type II. The available variant effect predictions contribute to a CATVariant prioritization score of 0.44 / 1. The record also includes published literature and structural context.
M1I (p.Met1Ile) variant details
- p.Met1Ile
- rs1187796945
- ClinGen CA401359809
- ClinVar RCV001249078
- Likely pathogenic
- Glycogen storage disease, type II
- Missense
- Variant Prioritization Score for Impact Estimate 0.444
- MetaLR 0.53
- MetaSVM -0.17
- PolyPhen-2 0.01
- SIFT 0.00
- MutPred 1.00
- ClinVar: Likely pathogenic (Glycogen storage disease, type II)
- EBI: Pathogenic
- UniProt: Pathogenic
- Structural context available
- Cited in: Pompe Disease. (PMID 20301438)
- Cited in: 2014 ESC Guidelines on diagnosis and management of hypertrophic cardiomyopathy: the Task Force for the Diagnosis and… (PMID 25173338)