G867D (p.Gly867Asp) variant of COL2A1 (Collagen alpha-1(II) chain)
G867D (p.Gly867Asp) in COL2A1 (Collagen alpha-1(II) chain) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as likely pathogenic in the context of not provided; Platyspondylic dysplasia, Torrance type. The available variant effect predictions contribute to a CATVariant prioritization score of 0.98 / 1. The record also includes published literature and structural context.
G867D (p.Gly867Asp) variant details
- p.Gly867Asp
- rs886042849
- ClinGen CA384544381
- ClinVar RCV003062498
- ClinVar RCV003314051
- Likely pathogenic
- not provided; Platyspondylic dysplasia, Torrance type
- Missense
- Variant Prioritization Score for Impact Estimate 0.979
- AlphaMissense 0.97
- MetaLR 0.99
- MetaSVM 0.98
- PolyPhen-2 1.00
- SIFT 0.00
- EVE 0.95
- ClinVar: Likely pathogenic (not provided; Platyspondylic dysplasia, Torrance type)
- EBI: Likely pathogenic
- UniProt: Likely pathogenic
- Structural context available
- Cited in: Type II Collagen Disorders Overview. (PMID 31021589)