C59Y (p.Cys59Tyr) variant of TNFRSF1A (P19438)
C59Y (p.Cys59Tyr) in TNFRSF1A (P19438) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as pathogenic/likely pathogenic in the context of not provided; TNF receptor-associated periodic fever syndrome (TRAPS). The available variant effect predictions contribute to a CATVariant prioritization score of 0.95 / 1. The record also includes published literature and structural context.
C59Y (p.Cys59Tyr) variant details
- p.Cys59Tyr
- rs104895223
- ClinGen CA280721
- ClinVar RCV000083905
- ClinVar RCV004791264
- Pathogenic/Likely pathogenic
- not provided; TNF receptor-associated periodic fever syndrome (TRAPS)
- Missense
- Variant Prioritization Score for Impact Estimate 0.946
- AlphaMissense 0.99
- MetaLR 1.00
- MetaSVM 0.82
- PolyPhen-2 1.00
- SIFT 0.00
- EVE 0.93
- ClinVar: Pathogenic/Likely pathogenic (not provided; TNF receptor-associated periodic fever syndrome (T)
- EBI: Pathogenic (in FPF)
- UniProt: Pathogenic (in FPF)
- Structural context available
- Cited in: Guidelines for the genetic diagnosis of hereditary recurrent fevers. (PMID 22661645)
- Cited in: ISSAID/EMQN Best Practice Guidelines for the Genetic Diagnosis of Monogenic Autoinflammatory Diseases in the… (PMID 32176780)