S653F (p.Ser653Phe) variant of SMC1A (Q14683)
S653F (p.Ser653Phe) in SMC1A (Q14683) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as pathogenic in the context of Congenital muscular hypertrophy-cerebral syndrome. The available variant effect predictions contribute to a CATVariant prioritization score of 0.86 / 1. The record also includes published literature and structural context.
S653F (p.Ser653Phe) variant details
- p.Ser653Phe
- rs2075687166
- ClinGen CA413252464
- ClinVar RCV001270900
- Ensembl rs2075687166
- Pathogenic
- Congenital muscular hypertrophy-cerebral syndrome
- Missense
- Variant Prioritization Score for Impact Estimate 0.864
- ESM-1b 1.00
- AlphaMissense 1.00
- MetaLR 0.82
- MetaSVM 0.86
- PolyPhen-2 1.00
- SIFT 0.00
- ClinVar: Pathogenic (Congenital muscular hypertrophy-cerebral syndrome)
- EBI: Pathogenic
- UniProt: Pathogenic
- Structural context available
- Cited in: Cornelia de Lange Syndrome. (PMID 20301283)