SMAD3 (SMAD family member 3) variants and mutations
SMAD3 (also known as SMAD family member 3) is a human protein-coding gene encoding a SMAD family member 3 protein. It carries TGF-beta receptor signals into the nucleus to control extracellular-matrix, differentiation, and growth programs. Heterozygous loss-of-function variants cause Loeys-Dietz syndrome type 3 with arterial aneurysm and dissection risk and often early osteoarthritis. This analysis covers 901 SMAD3 variants and mutations. Of these, 65% have computational variant effect predictions. Disease context includes aneurysm-osteoarthritis syndrome, Aneurysm - osteoarthritis syndrome, and familial thoracic aortic aneurysm and aortic dissection. Example SMAD3 variants include M1I, M1L, and M1T.
Variant analysis overview
- Gene: SMAD3
- Protein: SMAD family member 3
- UniProt accession: P84022
- Organism: Homo sapiens
- Variants analyzed: 901
- Variant scope: all variants
- Completed: 2026-08-18
Variant and mutation evidence
- Variant composition: 771 unspecified-consequence records; 68 missense variants; 49 synonymous variants; 3 stop-gained variants; 7 frameshift variants; 1 in-frame deletions; 1 splice-region variants; 1 substitution
- Prediction scores: 582 variants have prediction scores (65% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: aneurysm-osteoarthritis syndrome, Aneurysm - osteoarthritis syndrome, familial thoracic aortic aneurysm and aortic dissection, asthma, Rare disease with thoracic aortic aneurysm and aortic dissection, Abnormality of the skeletal system, Loeys-Dietz syndrome, osteoarthritis, hip, respiratory system disorder, allergic disease, cancer, thyroid gland carcinoma.
Protein structure and variant hotspots
- Protein features: 2 domains; 4 binding sites; 12 post-translational modification sites.
- Structural context: 710 variants have structural context.
- PTM context: 28 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, ClinGen, MaveDB, LitVar.
Notable SMAD3 variants
Examples include M1I, M1L, M1T, M1V, S2*, S2W, S2P, S2L. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- M1I (p.Met1Ile), rs2140188685, ClinGen CA393202671, ClinVar RCV001799526, ClinVar RCV002377898, MetaLR 0.73, MetaSVM 0.28, Pathogenic/Likely pathogenic, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- M1L (p.Met1Leu), rs1555405092, ClinGen CA393202665, ClinVar RCV002315227, ClinVar RCV005415437, MetaLR 0.71, MetaSVM 0.18, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- M1T (p.Met1Thr), rs2504999773, ClinGen CA393202669, ClinVar RCV004016898, ClinVar RCV006483843, Pathogenic/Likely pathogenic, Aneurysm-osteoarthritis syndrome; Familial thoracic aortic aneurysm and aortic d
- M1V (p.Met1Val), rs1555405092, ClinGen CA393202666, ClinVar RCV001526579, ClinVar RCV006467638, MetaLR 0.71, MetaSVM 0.18, Pathogenic, Familial thoracic aortic aneurysm and aortic dissection; Aortic aneurysm
- S2* (p.Ser2Ter), rs1006530719, ClinGen CA393202677, ClinVar RCV000521242, ClinVar RCV001218505, AlphaMissense 0.85, MetaLR 0.84, Pathogenic
- S2W (p.Ser2Trp), rs1006530719, ClinGen CA272431420, ClinVar RCV003172510, ClinVar RCV004801327, AlphaMissense 0.85, MetaLR 0.84, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; not provided
- S2P (p.Ser2Pro), gnomAD 15-67066158-T-C, REVEL 0.51, CADD 24.80
- S2L (p.Ser2Leu), gnomAD 15-67066159-C-T, REVEL 0.40, CADD 24.20
- S2S (p.Ser2Ser), gnomAD 15-67066160-G-T, CADD 14.00
- S3A (p.Ser3Ala), ExAC rs761230207, gnomAD rs761230207
- S3C (p.Ser3Cys), Ensembl rs2140188699
- S3P (p.Ser3Pro), ExAC rs761230207, gnomAD rs761230207, REVEL 0.84, CADD 29.30
- S3T (p.Ser3Thr), ExAC rs761230207, gnomAD rs761230207, REVEL 0.53, CADD 22.90, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- S3F (p.Ser3Phe), gnomAD 15-67066162-C-T, REVEL 0.74, CADD 26.80
- S3S (p.Ser3Ser), rs149022137, gnomAD 15-67066163-C-T, CADD 14.20
- I4F (p.Ile4Phe), gnomAD rs1405891269, REVEL 0.60, CADD 24.30
- I4S (p.Ile4Ser), Ensembl rs1959910214
- I4T (p.Ile4Thr), rs1959910214, ClinGen CA393202688, ClinVar RCV004523813, REVEL 0.77, CADD 24.50, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- I4V (p.Ile4Val), gnomAD rs1405891269, Uncertain significance, not provided
- I4I (p.Ile4Ile), gnomAD 15-67066166-C-A, CADD 13.20
- L5L (p.Leu5Leu), gnomAD 15-67066167-C-T, CADD 13.30
- L5M (p.Leu5Met), gnomAD 15-67066167-C-A, REVEL 0.65, CADD 24.40
- L5Q (p.Leu5Gln), rs1960682939, gnomAD 15-67098893-TCCTG, CADD 4.32
- L5P (p.Leu5Pro), rs964895157, gnomAD 15-67098896-T-C, CADD 0.43
- P6L (p.Pro6Leu), rs863223749, ClinGen CA321625, ClinVar RCV000197181, gnomAD rs863223749, REVEL 0.77, CADD 23.80, Uncertain significance, not provided
- P6S (p.Pro6Ser), TOPMed rs1181152060, gnomAD rs1181152060, REVEL 0.47, CADD 19.30, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- P6T (p.Pro6Thr), gnomAD 15-67066170-C-A, REVEL 0.64, CADD 23.30
- P6P (p.Pro6Pro), rs191495317, gnomAD 15-67066172-T-G, CADD 12.70
- P6Q (p.Pro6Gln), gnomAD 15-67098890-C-A, CADD 0.03
- F7F (p.Phe7Phe), rs1423178721, gnomAD 15-67066175-C-T, CADD 14.00
- F7L (p.Phe7Leu), gnomAD 15-67066175-C-A, REVEL 0.67, CADD 23.30
- T8P (p.Thr8Pro), Ensembl rs2140188729, REVEL 0.91, CADD 27.80
- T8S (p.Thr8Ser), rs2140188733, ClinGen CA393202713, ClinVar RCV001948166, Ensembl rs2140188733, AlphaMissense 0.37, MetaLR 0.75, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- T8I (p.Thr8Ile), gnomAD 15-67066177-C-T, REVEL 0.82, CADD 24.90
- T8T (p.Thr8Thr), gnomAD 15-67066178-T-A, CADD 9.73
- T8M (p.Thr8Met), rs1172546213, gnomAD 15-67138052-C-T, CADD 0.51
- P9L (p.Pro9Leu), ExAC rs762101727, gnomAD rs762101727, REVEL 0.80, CADD 24.10
- P9S (p.Pro9Ser), rs2504999826, ClinGen CA393202716, NCI-TCGA Cosmic COSV5928, ClinVar RCV003642766, REVEL 0.56, CADD 19.20, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- P9P (p.Pro9Pro), rs765454938, gnomAD 15-67066181-C-T, CADD 10.80
- P10A (p.Pro10Ala), rs1442483457, ClinGen CA393202721, ClinVar RCV004703279, gnomAD rs1442483457, REVEL 0.60, CADD 23.30, Uncertain significance, Aneurysm-osteoarthritis syndrome
- P10T (p.Pro10Thr), gnomAD 15-67066182-C-A, REVEL 0.64, CADD 24.70
- P10R (p.Pro10Arg), gnomAD 15-67066183-C-G, REVEL 0.80, CADD 27.00
- P10Q (p.Pro10Gln), gnomAD 15-67066183-C-A, REVEL 0.61, CADD 26.40
- P10P (p.Pro10Pro), gnomAD 15-67066184-G-A, CADD 14.80
- P10S (p.Pro10Ser), rs1960683495, gnomAD 15-67098904-C-T, CADD 7.23
- P10L (p.Pro10Leu), gnomAD 15-67098905-C-T, CADD 6.20
- P10H (p.Pro10His), rs1439082602, gnomAD 15-67098980-C-A, CADD 4.51
- I11M (p.Ile11Met), ExAC rs750644348, gnomAD rs750644348
- I11V (p.Ile11Val), Ensembl rs1959911091
- I11N (p.Ile11Asn), gnomAD 15-67066186-T-A, REVEL 0.51, CADD 25.50
- I11I (p.Ile11Ile), rs750644348, gnomAD 15-67066187-C-A, CADD 14.30
- V12E (p.Val12Glu), Ensembl rs1959911364
- V12L (p.Val12Leu), rs1390289135, ClinGen CA393202734, ClinVar RCV000526860, ClinVar RCV005869615, REVEL 0.69, CADD 26.90, Uncertain significance, not provided; Familial thoracic aortic aneurysm and aortic dissection
- V12M (p.Val12Met), gnomAD rs1390289135, Uncertain significance
- V12V (p.Val12Val), gnomAD 15-67066190-G-T, CADD 13.70
- V12A (p.Val12Ala), rs1425176732, gnomAD 15-67098908-T-C, CADD 1.23
- V12F (p.Val12Phe), gnomAD 15-67098919-G-T, CADD 0.44
- V12I (p.Val12Ile), rs1386430240, gnomAD 15-67098919-G-A, CADD 0.56
- K13M (p.Lys13Met), Ensembl rs1959911549
- K13R (p.Lys13Arg), Ensembl rs1959911549
- K13T (p.Lys13Thr), Ensembl rs1959911549
- K13K (p.Lys13Lys), gnomAD 15-67138059-A-G, CADD 5.13
- R14L (p.Arg14Leu), TOPMed rs1321080616, gnomAD rs1321080616, REVEL 0.75, AlphaMissense 0.98
- R14P (p.Arg14Pro), rs1321080616, ClinGen CA393202750, ClinVar RCV003876482, ClinVar RCV005402105, AlphaMissense 0.98, MetaLR 0.59, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; not provided
- R14G (p.Arg14Gly), gnomAD 15-67098898-A-G, CADD 6.21
- R14K (p.Arg14Lys), rs1328492403, gnomAD 15-67098899-G-A, CADD 4.76
- R14R (p.Arg14Arg), rs1015056172, gnomAD 15-67098918-G-A, CADD 6.29
- R14T (p.Arg14Thr), rs1960686549, gnomAD 15-67098995-G-C, CADD 7.23
- R14W (p.Arg14Trp), rs868026656, gnomAD 15-67138078-C-T, CADD 0.06
- R14Q (p.Arg14Gln), rs746123640, gnomAD 15-67138079-G-A, CADD 0.13
- L15L (p.Leu15Leu), rs1360950834, gnomAD 15-67066199-G-C, CADD 13.10
- L16V (p.Leu16Val), rs2140188791, ClinGen CA393202758, ClinVar RCV001525816, ClinVar RCV004008874, REVEL 0.40, CADD 20.50, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- L16L (p.Leu16Leu), rs886039210, gnomAD 15-67066202-G-A, CADD 13.20
- G17R (p.Gly17Arg), 1000Genomes rs183418982, ExAC rs183418982, TOPMed rs183418982, gnomAD rs183418982, REVEL 0.68, CADD 28.40, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- G17S (p.Gly17Ser), 1000Genomes rs183418982, ExAC rs183418982, TOPMed rs183418982, gnomAD rs183418982, REVEL 0.55, CADD 25.00
- G17* (p.Gly17Ter), gnomAD 15-67098877-G-T, CADD 4.59
- G17E (p.Gly17Glu), rs1225150015, gnomAD 15-67098878-G-A, CADD 8.71
- G17G (p.Gly17Gly), rs1960682532, gnomAD 15-67098879-A-T, CADD 5.32
- G17W (p.Gly17Trp), gnomAD 15-67098880-G-T, CADD 3.78
- G17V (p.Gly17Val), gnomAD 15-67098881-G-T, CADD 2.19
- G17A (p.Gly17Ala), gnomAD 15-67098902-G-C, CADD 1.89
- G17D (p.Gly17Asp), gnomAD 15-67138061-G-A, CADD 5.43
- W18* (p.Trp18Ter), TOPMed rs1020486879, gnomAD rs1020486879
- W18V (p.Trp18Val), gnomAD 15-67098879-A-AG, CADD 4.15
- W18C (p.Trp18Cys), gnomAD 15-67098885-G-T, CADD 0.87
- W18R (p.Trp18Arg), rs1961712266, gnomAD 15-67138087-T-C, CADD 1.50
- K19N (p.Lys19Asn), rs867126915, ClinGen CA393202782, ClinVar RCV003318231, Uncertain significance, not provided
- K19R (p.Lys19Arg), rs1959912294, ClinGen CA393202779, ClinVar RCV001523932, Ensembl rs1959912294, REVEL 0.25, CADD 23.30, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- K19K (p.Lys19Lys), rs867126915, gnomAD 15-67066211-G-A, CADD 13.50
- K19E (p.Lys19Glu), gnomAD 15-67138081-A-G, CADD 8.55
- K20R (p.Lys20Arg), TOPMed rs1375050629, gnomAD rs1375050629, REVEL 0.16, CADD 23.20
- G21C (p.Gly21Cys), gnomAD 15-67066215-G-T, REVEL 0.46, CADD 25.40
- G21G (p.Gly21Gly), rs751526306, gnomAD 15-67066217-C-A, CADD 10.70
- E22K (p.Glu22Lys), rs2140188822, ClinGen CA393202797, ClinVar RCV002244470, Ensembl rs2140188822, AlphaMissense 0.77, MetaLR 0.33, Uncertain significance, not provided
- E22* (p.Glu22Ter), gnomAD 15-67066218-G-T, CADD 38.00
- E22E (p.Glu22Glu), rs187952791, gnomAD 15-67066220-G-A, CADD 11.70
- Q23* (p.Gln23Ter), rs2140188838, ClinGen CA393202807, NCI-TCGA Cosmic COSV5929, ClinVar RCV003485905, AlphaMissense 0.28, MetaLR 0.27, Likely pathogenic
- Q23K (p.Gln23Lys), Ensembl rs2140188838, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- Q23R (p.Gln23Arg), rs2504999908, ClinGen CA393202808, ClinVar RCV004008156, Uncertain significance, Aneurysm-osteoarthritis syndrome
- Q23H (p.Gln23His), gnomAD 15-67098927-G-T, CADD 0.52
- Q23Q (p.Gln23Gln), rs1440086901, gnomAD 15-67098927-G-A, CADD 0.66
- Q23P (p.Gln23Pro), gnomAD 15-67098944-A-C, CADD 0.64
- Q23E (p.Gln23Glu), rs1961710497, gnomAD 15-67138048-C-G, CADD 3.07
- Q23L (p.Gln23Leu), rs1263592351, gnomAD 15-67138049-A-T, CADD 0.49
- N24K (p.Asn24Lys), rs780995229, ClinGen CA272431463, ClinVar RCV000697160, ExAC rs780995229, REVEL 0.17, CADD 21.90, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- N24S (p.Asn24Ser), rs2140188843, ClinGen CA393202818, ClinVar RCV002370832, ClinVar RCV004804449, REVEL 0.21, CADD 22.20, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- N24T (p.Asn24Thr), gnomAD 15-67066223-GA-G, CADD 29.70
- N24N (p.Asn24Asn), rs780995229, gnomAD 15-67066226-C-T, CADD 12.80
- G25R (p.Gly25Arg), gnomAD rs1231386919, REVEL 0.36, CADD 23.90
- G25V (p.Gly25Val), rs191612061, ClinGen CA062652, NCI-TCGA Cosmic COSV5928, ClinVar RCV000530170, REVEL 0.43, CADD 24.80, Uncertain significance, not specified; Aneurysm-osteoarthritis syndrome; not provided
- G25A (p.Gly25Ala), gnomAD 15-67066228-G-C, REVEL 0.29, CADD 23.20
- G25G (p.Gly25Gly), gnomAD 15-67066229-G-C, CADD 13.90
- Q26* (p.Gln26Ter), Ensembl rs2140188856, Likely pathogenic
- Q26H (p.Gln26His), NCI-TCGA Cosmic COSV5928, Variant assessed as somatic; moderate impact.
- Q26K (p.Gln26Lys), Ensembl rs2140188856, Likely pathogenic
- E27* (p.Glu27Ter), NCI-TCGA TCGA novel, Variant assessed as somatic; high impact.
- E27E (p.Glu27Glu), rs755882401, gnomAD 15-67066235-G-A, CADD 13.40
- E27K (p.Glu27Lys), gnomAD 15-67098952-G-A, CADD 8.39
- E27V (p.Glu27Val), gnomAD 15-67098953-A-T, CADD 7.57
- E28* (p.Glu28Ter), rs863223750, ClinGen CA323266, ClinVar RCV000198731, ClinVar RCV000772179, Pathogenic
- E28D (p.Glu28Asp), NCI-TCGA TCGA novel, REVEL 0.13, CADD 22.80, Variant assessed as somatic; moderate impact.
- E28Q (p.Glu28Gln), gnomAD 15-67066236-G-C, REVEL 0.58, CADD 27.20
- K29* (p.Lys29Ter), Ensembl rs2140188870
- K29R (p.Lys29Arg), ExAC rs777440658, gnomAD rs777440658, REVEL 0.67, CADD 28.70
- K29K (p.Lys29Lys), gnomAD 15-67066241-A-G, CADD 13.70
- W30R (p.Trp30Arg), gnomAD 15-67066242-T-C, REVEL 0.83, CADD 32.00
- W30L (p.Trp30Leu), gnomAD 15-67164901-G-T, CADD 11.40
- W30* (p.Trp30Ter), rs1487765616, gnomAD 15-67164901-G-A, CADD 12.40
- C31G (p.Cys31Gly), Ensembl rs1595882118
- C31S (p.Cys31Ser), TOPMed rs1443339510, gnomAD rs1443339510, REVEL 0.33, CADD 23.10, Uncertain significance, not provided; Familial thoracic aortic aneurysm and aortic dissection
- C31R (p.Cys31Arg), rs1960684911, gnomAD 15-67098946-T-C, CADD 4.65
- C31F (p.Cys31Phe), gnomAD 15-67098947-G-T, CADD 3.22
- E32* (p.Glu32Ter), rs2140188891, ClinGen CA393202874, ClinVar RCV001374825, Ensembl rs2140188891, Likely pathogenic
- E32A (p.Glu32Ala), gnomAD rs1366150688, REVEL 0.89, CADD 29.70
- E32D (p.Glu32Asp), rs1450927153, ClinGen CA393202878, ClinVar RCV002221932, ClinVar RCV002382474, REVEL 0.76, CADD 25.70, Uncertain significance, not provided; Familial thoracic aortic aneurysm and aortic dissection; Aneurysm
- E32E (p.Glu32Glu), rs1450927153, gnomAD 15-67066250-G-A, CADD 13.30
- K33K (p.Lys33Lys), rs1959913592, gnomAD 15-67066253-G-A, CADD 12.90
- A34E (p.Ala34Glu), rs2140188911, ClinGen CA393202892, ClinVar RCV002375883, AlphaMissense 0.98, MetaLR 0.68, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- A34G (p.Ala34Gly), Ensembl rs2140188911
- A34T (p.Ala34Thr), rs2140188906, ClinGen CA393202888, ClinVar RCV001809158, ClinVar RCV001869596, AlphaMissense 1.00, MetaLR 0.63, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection; Aneurysm-osteoarthritis
- A34V (p.Ala34Val), Ensembl rs2140188911, REVEL 0.70, AlphaMissense 0.98
- A34A (p.Ala34Ala), rs748990258, gnomAD 15-67066256-G-T, CADD 12.90
- A34S (p.Ala34Ser), rs1961711021, gnomAD 15-67138060-GGC-G, CADD 3.36
- A34P (p.Ala34Pro), rs1481516589, gnomAD 15-67138066-G-C, CADD 6.74
- V35A (p.Val35Ala), Ensembl rs2140188927
- V35D (p.Val35Asp), Ensembl rs2140188927
- V35G (p.Val35Gly), Ensembl rs2140188927
- V35I (p.Val35Ile), Ensembl rs2140188921
- V35V (p.Val35Val), gnomAD 15-67066259-C-T, CADD 13.10
- K36* (p.Lys36Ter), rs1420747523, ClinGen CA393202902, ClinVar RCV003486418, AlphaMissense 0.98, MetaLR 0.53, Likely pathogenic
- K36M (p.Lys36Met), Ensembl rs2140188935
- K36Q (p.Lys36Gln), gnomAD rs1420747523, REVEL 0.51, AlphaMissense 0.98
- K36R (p.Lys36Arg), Ensembl rs2140188935
- S37C (p.Ser37Cys), rs2504999993, ClinGen CA393202909, ClinVar RCV003643952, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- S37I (p.Ser37Ile), rs1555405107, ClinGen CA393202913, ClinVar RCV000654799, Ensembl rs1555405107, AlphaMissense 0.99, MetaLR 0.60, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- S37N (p.Ser37Asn), rs1555405107, ClinGen CA393202911, ClinVar RCV004016621, REVEL 0.36, AlphaMissense 0.99, Uncertain significance, Aneurysm-osteoarthritis syndrome
- p.Ser37 Lys40del, rs863223755, gnomAD 15-67066255-CGGTC, CADD 22.20
- S37S (p.Ser37Ser), gnomAD 15-67066265-C-T, CADD 13.10
- S37P (p.Ser37Pro), gnomAD 15-67098949-T-C, CADD 11.30
- L38L (p.Leu38Leu), rs770416788, gnomAD 15-67066266-C-T, CADD 10.40
- L38I (p.Leu38Ile), gnomAD 15-67098958-C-A, CADD 8.15
- L38H (p.Leu38His), gnomAD 15-67098959-T-A, CADD 10.60
- L38F (p.Leu38Phe), gnomAD 15-67098972-AC-A, CADD 5.23
- V39A (p.Val39Ala), Ensembl rs2140188959, CADD 6.59
- V39D (p.Val39Asp), Ensembl rs2140188959
- V39L (p.Val39Leu), rs2140188954, ClinGen CA393202922, ClinVar RCV001977646, Ensembl rs2140188954, AlphaMissense 0.97, MetaLR 0.53, Uncertain significance, Familial thoracic aortic aneurysm and aortic dissection
- V39I (p.Val39Ile), gnomAD 15-67066269-G-A, REVEL 0.39, CADD 24.90
- V39V (p.Val39Val), rs1595882130, gnomAD 15-67066271-C-T, CADD 12.00
- V39F (p.Val39Phe), gnomAD 15-67099003-G-T, CADD 4.90
- K40R (p.Lys40Arg), rs2140188975, ClinGen CA393202931, ClinVar RCV002224194, Ensembl rs2140188975, AlphaMissense 0.50, MetaLR 0.64, Uncertain significance, not provided
- K41K (p.Lys41Lys), gnomAD 15-67066277-A-G, CADD 13.00
- L42F (p.Leu42Phe), gnomAD rs1172150065, REVEL 0.78, CADD 24.80
- L42I (p.Leu42Ile), gnomAD rs1172150065
- L42L (p.Leu42Leu), rs1595882137, gnomAD 15-67066280-C-G, CADD 11.50
- K43* (p.Lys43Ter), NCI-TCGA Cosmic COSV1005, NCI-TCGA Cosmic COSV5928, Variant assessed as somatic; high impact.
- K43N (p.Lys43Asn), Ensembl rs2140188989
- K43R (p.Lys43Arg), gnomAD 15-67066282-A-G, REVEL 0.76, CADD 25.60
- T45M (p.Thr45Met), Ensembl rs2140188999, REVEL 0.36, CADD 26.20
- T45T (p.Thr45Thr), rs778462473, gnomAD 15-67066289-G-T, CADD 11.40
- T45I (p.Thr45Ile), rs1445177748, gnomAD 15-67098986-C-T, CADD 0.29
Public SMAD3 analysis runs
- SMAD3 analysis run — SMAD3 (901 variants) — completed 2026-08-18