M1T (p.Met1Thr) variant of SDHC (Q99643)
M1T (p.Met1Thr) in SDHC (Q99643) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as pathogenic in the context of Pheochromocytoma/paraganglioma syndrome 3; Gastrointestinal stromal tumor. The available variant effect predictions contribute to a CATVariant prioritization score of 0.90 / 1. The record also includes published literature and structural context.
M1T (p.Met1Thr) variant details
- p.Met1Thr
- rs1670517782
- ClinGen CA343354890
- ClinVar RCV003800158
- Pathogenic
- Pheochromocytoma/paraganglioma syndrome 3; Gastrointestinal stromal tumor
- Missense
- Variant Prioritization Score for Impact Estimate 0.899
- MetaLR 0.92
- MetaSVM 1.08
- PolyPhen-2 0.61
- SIFT 0.00
- MutPred 0.92
- ClinVar: Pathogenic (Pheochromocytoma/paraganglioma syndrome 3; Gastrointestinal stro)
- EBI: Pathogenic
- UniProt: Pathogenic
- Structural context available
- Cited in: The UK NEQAS for Molecular Genetics scheme for gastrointestinal stromal tumour: findings and recommendations following… (PMID 22685257)
- Cited in: Tumor markers in colorectal cancer, gastric cancer and gastrointestinal stromal cancers: European group on tumor… (PMID 23852704)