T20P (p.Thr20Pro) variant of PSTPIP1 (O43586)
T20P (p.Thr20Pro) in PSTPIP1 (O43586) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as uncertain significance in the context of Pyogenic arthritis-pyoderma gangrenosum-acne syndrome. The available variant effect predictions contribute to a CATVariant prioritization score of 0.27 / 1. The record also includes experimental measurements and structural context.
T20P (p.Thr20Pro) variant details
- p.Thr20Pro
- rs2076088348
- ClinGen CA393518173
- ClinVar RCV003613102
- Uncertain significance
- Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
- Missense
- Variant Prioritization Score for Impact Estimate 0.267
- AlphaMissense 0.06
- MetaLR 0.01
- MetaSVM -0.97
- PolyPhen-2 0.00
- SIFT 0.77
- EVE 0.10
- ClinVar: Uncertain significance (Pyogenic arthritis-pyoderma gangrenosum-acne syndrome)
- EBI: Variant of uncertain significance
- UniProt: Uncertain significance
- Structural context available
- PSTPIP1 SH3 domain domainome 1.0: score -0.659