M1T (p.Met1Thr) variant of NPC2 (P61916)
M1T (p.Met1Thr) in NPC2 (P61916) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as likely pathogenic in the context of Niemann-Pick disease, type C2. The available variant effect predictions contribute to a CATVariant prioritization score of 0.83 / 1. The record also includes published literature and structural context.
M1T (p.Met1Thr) variant details
- p.Met1Thr
- rs1555346368
- ClinGen CA390377014
- ClinVar RCV000668937
- NCI-TCGA Cosmic COSV5314
- Likely pathogenic
- Niemann-Pick disease, type C2
- Missense
- Variant Prioritization Score for Impact Estimate 0.828
- ESM-1b 1.00
- AlphaMissense 0.41
- MetaLR 0.83
- MetaSVM 0.83
- PolyPhen-2 0.99
- SIFT 0.00
- ClinVar: Likely pathogenic (Niemann-Pick disease, type C2)
- EBI: Likely pathogenic
- UniProt: Likely pathogenic
- Structural context available
- Cited in: Niemann-Pick Disease Type C. (PMID 20301473)