T35M (p.Thr35Met) variant of LCK (Tyrosine-protein kinase Lck)
T35M (p.Thr35Met) in LCK (Tyrosine-protein kinase Lck) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as uncertain significance in the context of Severe combined immunodeficiency due to LCK deficiency. The available variant effect predictions contribute to a CATVariant prioritization score of 0.07 / 1. The record also includes population frequency data, experimental measurements, and structural context.
T35M (p.Thr35Met) variant details
- p.Thr35Met
- rs1640192230
- ClinGen CA339635885
- NCI-TCGA Cosmic COSV1002
- cosmic curated COSV10028
- Uncertain significance
- Severe combined immunodeficiency due to LCK deficiency
- Missense
- Variant Prioritization Score for Impact Estimate 0.0676
- REVEL 0.02
- CADD 10.40
- PolyPhen-2 0.00
- SIFT 0.08
- ClinVar: Uncertain significance (Severe combined immunodeficiency due to LCK deficiency)
- EBI: Variant of uncertain significance
- UniProt: Uncertain significance
- Most common in the Latino/Admixed American population (allele frequency 2.3e-05)
- Structural context available
- LCK SH3 domain domainome 1.0: score -0.131