IFT172 (Q9UG01) variants and mutations
IFT172 (also known as Q9UG01) is a human protein-coding gene encoding an intraflagellar transport protein 172 homolog protein. It supports intraflagellar transport required for assembly and maintenance of primary and sensory cilia. Biallelic pathogenic variants cause ciliopathies that can involve retinal degeneration, skeletal abnormalities, kidney disease, or Joubert-spectrum neurologic findings. This analysis covers 2,187 IFT172 variants and mutations. Of these, 79% have computational variant effect predictions. Disease context includes short-rib thoracic dysplasia 10 with or without polydactyly, retinitis pigmentosa 71, and Bardet-Biedl syndrome 20. Example IFT172 variants include H2N, H2P, and H2Q.
Variant analysis overview
- Gene: IFT172
- Protein: Q9UG01
- UniProt accession: Q9UG01
- Organism: Homo sapiens
- Variants analyzed: 2187
- Variant scope: all variants
- Completed: 2026-08-21
Variant and mutation evidence
- Variant composition: 1,984 unspecified-consequence records; 1 stop lost; 21 frameshift variants; 95 missense variants; 71 synonymous variants; 8 stop-gained variants; 5 splice-region variants; 2 in-frame insertions; 2 in-frame deletions; 1 substitution
- Prediction scores: 1,721 variants have prediction scores (79% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: short-rib thoracic dysplasia 10 with or without polydactyly, retinitis pigmentosa 71, Bardet-Biedl syndrome 20, Jeune syndrome, retinitis pigmentosa, short-rib thoracic dysplasia 9 with or without polydactyly, short rib dysplasia, Retinal dystrophy, Bardet-Biedl syndrome, hereditary disease, Bardet-Biedl syndrome 22, ciliopathy.
Protein structure and variant hotspots
- Protein features: 2 post-translational modification sites.
- PTM context: 2 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable IFT172 variants
Examples include H2N, H2P, H2Q, H2R, L3W, H5D, H5Y, L6V. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- H2N (p.His2Asn), rs752135960, ClinGen CA1581146, ClinVar RCV003890672, ExAC rs752135960, REVEL 0.10, CADD 22.60, Uncertain significance, Retinal dystrophy
- H2P (p.His2Pro), rs781257867, ClinGen CA1581145, ClinVar RCV001294412, ExAC rs781257867, REVEL 0.05, CADD 23.80, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- H2Q (p.His2Gln), TOPMed rs1430470069, gnomAD rs1430470069, REVEL 0.03, CADD 13.20, Likely benign
- H2R (p.His2Arg), rs781257867, ClinGen CA346404785, ClinVar RCV002643483, REVEL 0.08, CADD 21.50, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- L3W (p.Leu3Trp), rs1246454433, ClinGen CA346404770, ClinVar RCV002014482, ClinVar RCV005225548, REVEL 0.51, CADD 27.90, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- H5D (p.His5Asp), ExAC rs754840856, gnomAD rs754840856, REVEL 0.18, CADD 26.30
- H5Y (p.His5Tyr), cosmic curated COSV10635, ExAC rs754840856, gnomAD rs754840856, REVEL 0.10, CADD 21.30
- L6V (p.Leu6Val), TOPMed rs1245102913, gnomAD rs1245102913, REVEL 0.02, CADD 22.80
- R7K (p.Arg7Lys), ExAC rs766303251, TOPMed rs766303251, gnomAD rs766303251
- R7M (p.Arg7Met), ExAC rs766303251, TOPMed rs766303251, gnomAD rs766303251, REVEL 0.18, CADD 29.00
- T8I (p.Thr8Ile), gnomAD rs1572846688, REVEL 0.39, CADD 28.80
- T8S (p.Thr8Ser), TOPMed rs933834225
- S11N (p.Ser11Asn), cosmic curated COSV10806, gnomAD rs1252190644, REVEL 0.09, CADD 21.90, Uncertain significance, Inborn genetic diseases
- P12L (p.Pro12Leu), gnomAD rs1669022527, REVEL 0.19, CADD 25.30
- Q13R (p.Gln13Arg), ExAC rs762799040, gnomAD rs762799040
- G15E (p.Gly15Glu), cosmic curated COSV53139, TOPMed rs1572838053, Uncertain significance
- G15R (p.Gly15Arg), Ensembl rs1668694489, REVEL 0.17, CADD 24.20
- G15V (p.Gly15Val), rs1572838053, ClinGen CA346404090, ClinVar RCV002003558, ClinVar RCV002486537, AlphaMissense 0.65, MetaLR 0.21, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- A16D (p.Ala16Asp), Ensembl rs1668693713
- A16P (p.Ala16Pro), TOPMed rs1446973289, gnomAD rs1446973289, REVEL 0.09, CADD 22.30
- A17T (p.Ala17Thr), Ensembl rs1668693534, REVEL 0.18, CADD 22.50
- K18Q (p.Lys18Gln), ExAC rs780549551, gnomAD rs780549551
- K18R (p.Lys18Arg), 1000Genomes rs146548956, ExAC rs146548956, gnomAD rs146548956, REVEL 0.11, CADD 22.10
- T20I (p.Thr20Ile), rs751486617, ClinGen CA1581125, ClinVar RCV001213916, ClinVar RCV004548070, REVEL 0.21, CADD 22.40, Conflicting interpretations, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- M22L (p.Met22Leu), TOPMed rs1330779497, gnomAD rs1330779497
- M22V (p.Met22Val), TOPMed rs1330779497, gnomAD rs1330779497
- A23S (p.Ala23Ser), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- A23T (p.Ala23Thr), gnomAD rs1668692129, REVEL 0.37, CADD 22.40
- W24* (p.Trp24Ter), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99563, Variant assessed as somatic; high impact.
- W24G (p.Trp24Gly), ExAC rs780072358, gnomAD rs780072358
- W24S (p.Trp24Ser), gnomAD rs1369711394
- Q26H (p.Gln26His), rs1425471550, ClinGen CA346403772, ClinVar RCV002741923, gnomAD rs1425471550, REVEL 0.08, CADD 15.10, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- Q26R (p.Gln26Arg), ExAC rs758324408, gnomAD rs758324408, REVEL 0.09, CADD 22.80
- N28S (p.Asn28Ser), ExAC rs750235850, TOPMed rs750235850, gnomAD rs750235850, REVEL 0.18, CADD 21.30, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- A29V (p.Ala29Val), TOPMed rs1161494896, gnomAD rs1161494896, REVEL 0.07, CADD 20.20
- F31S (p.Phe31Ser), gnomAD rs1472492385, REVEL 0.53, CADD 24.80
- V33A (p.Val33Ala), rs200884031, ClinGen CA1581121, ClinVar RCV000893150, ClinVar RCV004551670, REVEL 0.49, CADD 24.20, Conflicting interpretations, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- V33L (p.Val33Leu), rs2148559931, ClinGen CA346403563, ClinVar RCV002011194, Ensembl rs2148559931, AlphaMissense 0.60, MetaLR 0.49, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- C34G (p.Cys34Gly), rs2466038500, ClinGen CA346403508, ClinVar RCV002681221, REVEL 0.54, CADD 25.80, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- T35I (p.Thr35Ile), NCI-TCGA Cosmic COSV5313, cosmic curated COSV53137, Variant assessed as somatic; moderate impact.
- T35P (p.Thr35Pro), ExAC rs761913977, gnomAD rs761913977, REVEL 0.56, CADD 24.70
- R38* (p.Arg38Ter), rs139021548, ClinGen CA204566, ClinVar RCV000190597, ClinVar RCV001387370, CADD 35.00, Pathogenic
- R38G (p.Arg38Gly), rs139021548, ClinGen CA1581119, ClinVar RCV002957697, ClinVar RCV004725425, REVEL 0.42, CADD 24.70, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- R38P (p.Arg38Pro), 1000Genomes rs552861632, ExAC rs552861632, TOPMed rs552861632, gnomAD rs552861632, REVEL 0.64, CADD 26.20, Uncertain significance
- R38Q (p.Arg38Gln), rs552861632, ClinGen CA1581118, NCI-TCGA Cosmic COSV9956, cosmic curated COSV99563, REVEL 0.39, CADD 25.90, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- L42M (p.Leu42Met), rs1007620906, ClinGen CA44520135, NCI-TCGA Cosmic COSV5313, NCI-TCGA Cosmic COSV5314, AlphaMissense 0.41, MetaLR 0.53, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- Y43C (p.Tyr43Cys), TOPMed rs1473980860, gnomAD rs1473980860, REVEL 0.57, CADD 26.80
- E45A (p.Glu45Ala), gnomAD rs1221471858, REVEL 0.49, CADD 24.20
- E45D (p.Glu45Asp), rs1350745027, ClinGen CA346403220, ClinVar RCV001321974, ClinVar RCV004548163, REVEL 0.24, CADD 14.80, Uncertain significance, Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia 10 with or without polyda
- H46L (p.His46Leu), rs1280850403, ClinGen CA346403206, ClinVar RCV002639977, ClinVar RCV005019316, REVEL 0.20, CADD 20.90, Uncertain significance, Bardet-Biedl syndrome 20; Retinitis pigmentosa 71; Short-rib thoracic dysplasia
- H46Q (p.His46Gln), gnomAD rs1668687495, REVEL 0.19, CADD 1.40
- H46R (p.His46Arg), TOPMed rs1280850403, gnomAD rs1280850403, REVEL 0.09, CADD 20.60, Uncertain significance
- G47E (p.Gly47Glu), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- R49Q (p.Arg49Gln), rs151097967, ClinGen CA1581113, ClinVar RCV001299604, ClinVar RCV001751576, REVEL 0.11, CADD 26.00, Uncertain significance, not provided; Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia 10 with or
- R49W (p.Arg49Trp), rs141043554, ClinGen CA1581114, cosmic curated COSV53131, ClinVar RCV001064556, REVEL 0.23, CADD 26.90, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- R50* (p.Arg50Ter), rs1668686361, ClinGen CA346403132, ClinVar RCV001207600, Ensembl rs1668686361, Pathogenic
- R50K (p.Arg50Lys), cosmic curated COSV53133, TOPMed rs1046047303, gnomAD rs1046047303, REVEL 0.16, CADD 23.20
- D51E (p.Asp51Glu), rs537341371, ClinGen CA1581112, ClinVar RCV001351973, 1000Genomes rs537341371, REVEL 0.42, CADD 23.60, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- K52T (p.Lys52Thr), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- F53I (p.Phe53Ile), rs776310391, ClinGen CA1581111, ClinVar RCV004554132, ExAC rs776310391, REVEL 0.36, CADD 26.70, Uncertain significance, IFT172-related disorder
- F53L (p.Phe53Leu), rs768058682, ClinGen CA1581110, NCI-TCGA Cosmic COSV5313, cosmic curated COSV53132, REVEL 0.27, CADD 24.60, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- S54F (p.Ser54Phe), rs1668685307, ClinGen CA346403005, ClinVar RCV002630791, TOPMed rs1668685307, AlphaMissense 0.53, MetaLR 0.32, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- T55S (p.Thr55Ser), rs746462745, ClinGen CA1581109, ClinVar RCV004554128, ExAC rs746462745, REVEL 0.22, CADD 25.50, Uncertain significance, IFT172-related disorder
- K56R (p.Lys56Arg), ExAC rs780205001, gnomAD rs780205001, REVEL 0.27, CADD 26.80, Uncertain significance
- K56T (p.Lys56Thr), rs780205001, ClinGen CA1581108, ClinVar RCV001314172, ClinVar RCV002499606, REVEL 0.55, CADD 27.20, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- P57S (p.Pro57Ser), TOPMed rs1668684634, gnomAD rs1668684634, REVEL 0.35, CADD 26.30
- D59E (p.Asp59Glu), rs950375924, ClinGen CA346402936, ClinVar RCV004548652, REVEL 0.12, CADD 16.80, Uncertain significance, IFT172-related disorder
- M60V (p.Met60Val), rs758377122, ClinGen CA1581107, ClinVar RCV002026500, ClinVar RCV002479788, REVEL 0.09, CADD 16.40, Uncertain significance, Retinitis pigmentosa 71; Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia
- K61N (p.Lys61Asn), ExAC rs745703364, gnomAD rs745703364, REVEL 0.15, CADD 29.70
- Y62C (p.Tyr62Cys), rs2148559384, ClinGen CA346402822, ClinVar RCV001970978, Ensembl rs2148559384, REVEL 0.26, CADD 26.20, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- R64K (p.Arg64Lys), gnomAD rs1214968975, REVEL 0.08, CADD 17.40
- K65E (p.Lys65Glu), ExAC rs77598375, gnomAD rs77598375, REVEL 0.27, CADD 26.50
- K65N (p.Lys65Asn), ExAC rs749094840, gnomAD rs749094840, REVEL 0.06, CADD 21.60
- K65Q (p.Lys65Gln), ExAC rs77598375, gnomAD rs77598375, REVEL 0.18, CADD 22.80
- S66C (p.Ser66Cys), ExAC rs777925178, gnomAD rs777925178, REVEL 0.41, CADD 27.20
- S66N (p.Ser66Asn), gnomAD rs1337472006, REVEL 0.16, CADD 23.60, Uncertain significance, IFT172-related disorder
- Y67H (p.Tyr67His), rs2466035920, ClinGen CA346402775, ClinVar RCV003224787, Uncertain significance, Bardet-Biedl syndrome
- Y67S (p.Tyr67Ser), TOPMed rs1450739446, gnomAD rs1450739446, REVEL 0.65, CADD 28.00, Uncertain significance, Inborn genetic diseases
- M68I (p.Met68Ile), rs1467002304, ClinGen CA346402750, ClinVar RCV003286053, ClinVar RCV004548548, REVEL 0.05, CADD 20.80, Uncertain significance, Inborn genetic diseases; IFT172-related disorder
- M68R (p.Met68Arg), gnomAD rs1357949641
- M68T (p.Met68Thr), rs1357949641, ClinGen CA346402755, ClinVar RCV002732691, AlphaMissense 0.37, MetaLR 0.21, Uncertain significance, Inborn genetic diseases
- M68V (p.Met68Val), rs1007588478, ClinGen CA44519585, ClinVar RCV001212939, ClinVar RCV003887909, REVEL 0.04, CADD 15.10, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- V69G (p.Val69Gly), gnomAD rs1410849775, REVEL 0.74, CADD 28.20
- V69M (p.Val69Met), rs756299134, ClinGen CA1581076, ClinVar RCV001071548, ExAC rs756299134, REVEL 0.54, CADD 25.10, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- G71D (p.Gly71Asp), gnomAD rs1392472019, REVEL 0.17, CADD 21.50
- A73P (p.Ala73Pro), rs2466035803, ClinGen CA346402687, ClinVar RCV003487926, Uncertain significance, not provided
- S75F (p.Ser75Phe), cosmic curated COSV99563, Ensembl rs919067805
- D77G (p.Asp77Gly), ExAC rs767606993, gnomAD rs767606993, REVEL 0.64, CADD 27.20, Uncertain significance, Inborn genetic diseases
- D77H (p.Asp77His), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- S78F (p.Ser78Phe), rs182323013, ClinGen CA1581073, ClinVar RCV003069492, ClinVar RCV004738670, REVEL 0.74, CADD 28.30, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- T79A (p.Thr79Ala), rs752069515, ClinGen CA1581072, ClinVar RCV001037389, ClinVar RCV002479241, REVEL 0.26, CADD 23.50, Conflicting interpretations, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- T79I (p.Thr79Ile), gnomAD rs1482208473, REVEL 0.23, CADD 22.40
- T79S (p.Thr79Ser), gnomAD rs1482208473, REVEL 0.12, CADD 21.20
- K80E (p.Lys80Glu), gnomAD rs1236871475, REVEL 0.54, CADD 26.50
- K80T (p.Lys80Thr), rs766853711, ClinGen CA1581071, cosmic curated COSV53134, ClinVar RCV001300630, REVEL 0.43, CADD 25.20, Uncertain significance, Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia 10 with or without polyda
- A82S (p.Ala82Ser), rs1398648274, ClinGen CA346402548, ClinVar RCV002890404, Ensembl rs1398648274, REVEL 0.61, CADD 25.40, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- I83M (p.Ile83Met), ExAC rs773591358, TOPMed rs773591358, gnomAD rs773591358, REVEL 0.32, CADD 22.60, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- I83T (p.Ile83Thr), NCI-TCGA Cosmic COSV5313, cosmic curated COSV53132, TOPMed rs1668658301, Variant assessed as somatic; moderate impact.
- I83V (p.Ile83Val), rs142227350, ClinGen CA1581070, ClinVar RCV000803992, ClinVar RCV002307619, REVEL 0.06, CADD 10.60, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- G84R (p.Gly84Arg), TOPMed rs1220923945, REVEL 0.62, CADD 25.80
- G84V (p.Gly84Val), TOPMed rs1668657802
- Q85L (p.Gln85Leu), TOPMed rs1315759776, gnomAD rs1315759776, REVEL 0.71, CADD 26.50
- Q85R (p.Gln85Arg), TOPMed rs1315759776, gnomAD rs1315759776, REVEL 0.66, CADD 25.60
- D87N (p.Asp87Asn), ExAC rs771712132, gnomAD rs771712132, REVEL 0.67, CADD 26.90
- N88S (p.Asn88Ser), rs1443634104, ClinGen CA346402434, ClinVar RCV001209261, ClinVar RCV004738191, REVEL 0.10, CADD 21.20, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- I89M (p.Ile89Met), TOPMed rs1668656318, REVEL 0.25, CADD 23.20
- I89V (p.Ile89Val), rs2466035250, ClinGen CA346402425, ClinVar RCV003025283, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- Y91C (p.Tyr91Cys), cosmic curated COSV53129, TOPMed rs1487026215, gnomAD rs1487026215, REVEL 0.34, CADD 26.60, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- V92A (p.Val92Ala), rs1306568500, ClinGen CA346402354, ClinVar RCV001908731, gnomAD rs1306568500, REVEL 0.71, CADD 26.30, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- V92L (p.Val92Leu), rs2148559132, ClinGen CA346402363, ClinVar RCV001931526, Ensembl rs2148559132, AlphaMissense 0.85, MetaLR 0.44, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- Y93C (p.Tyr93Cys), ExAC rs774211857, gnomAD rs774211857, REVEL 0.71, CADD 29.20
- K94E (p.Lys94Glu), TOPMed rs1668655061, REVEL 0.34, CADD 26.70
- K94N (p.Lys94Asn), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99563, Variant assessed as somatic; moderate impact.
- K94R (p.Lys94Arg), TOPMed rs1668654872, REVEL 0.13, AlphaMissense 0.07, Uncertain significance
- K94T (p.Lys94Thr), rs1668654872, ClinGen CA346402324, ClinVar RCV001909710, TOPMed rs1668654872, AlphaMissense 0.07, MetaLR 0.14, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- I95T (p.Ile95Thr), ExAC rs777604071, TOPMed rs777604071, gnomAD rs777604071, REVEL 0.60, CADD 26.50
- G96* (p.Gly96Ter), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99561, Variant assessed as somatic; high impact.
- E97D (p.Glu97Asp), rs189236939, ClinGen CA1581059, cosmic curated COSV53133, ClinVar RCV001374350, REVEL 0.18, CADD 19.40, Conflicting interpretations, not provided; Short-rib thoracic dysplasia 10 with or without polydactyly; Retin
- W99* (p.Trp99Ter), rs1668654133, ClinGen CA346402206, ClinVar RCV001195537, Ensembl rs1668654133, CADD 36.00, Likely pathogenic
- W99C (p.Trp99Cys), rs2148557687, ClinGen CA346402058, ClinVar RCV001968367, Ensembl rs2148557687, AlphaMissense 0.99, MetaLR 0.49, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- G100A (p.Gly100Ala), ExAC rs77414825, gnomAD rs77414825
- G100D (p.Gly100Asp), ExAC rs77414825, gnomAD rs77414825, REVEL 0.35, CADD 23.30
- K102R (p.Lys102Arg), TOPMed rs1417967814, gnomAD rs1417967814, Uncertain significance
- K102T (p.Lys102Thr), TOPMed rs1417967814, gnomAD rs1417967814, REVEL 0.55, CADD 27.00, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- K103E (p.Lys103Glu), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- C106G (p.Cys106Gly), TOPMed rs1176427334
- F109L (p.Phe109Leu), gnomAD rs762960466, REVEL 0.30, CADD 27.10, Uncertain significance, Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia 10 with or without polyda
- I110F (p.Ile110Phe), rs747883999, ClinGen CA1581040, ClinVar RCV001204688, ExAC rs747883999, REVEL 0.18, CADD 21.60, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- I110V (p.Ile110Val), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99563, ExAC rs747883999, TOPMed rs747883999, Uncertain significance
- Q111E (p.Gln111Glu), ExAC rs781453446, gnomAD rs781453446, REVEL 0.37, CADD 25.10
- Q111R (p.Gln111Arg), rs1423053908, ClinGen CA346401790, ClinVar RCV002979487, TOPMed rs1423053908, REVEL 0.53, CADD 26.00, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- T112M (p.Thr112Met), rs191146686, ClinGen CA1581037, ClinVar RCV002027040, 1000Genomes rs191146686, REVEL 0.13, CADD 23.50, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- T112P (p.Thr112Pro), ExAC rs768864867, gnomAD rs768864867, REVEL 0.17, CADD 23.30
- S113G (p.Ser113Gly), TOPMed rs1339707073, gnomAD rs1339707073, REVEL 0.20, CADD 22.80
- S113N (p.Ser113Asn), rs778306652, ClinGen CA1581012, ClinVar RCV001981283, ClinVar RCV003170454, REVEL 0.23, CADD 23.50, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- A114T (p.Ala114Thr), rs2148556996, ClinGen CA346401634, ClinVar RCV001890421, Ensembl rs2148556996, REVEL 0.29, CADD 24.80, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- T116A (p.Thr116Ala), TOPMed rs1668565925
- T116I (p.Thr116Ile), rs751230602, ClinGen CA1581010, ClinVar RCV001054122, ExAC rs751230602, REVEL 0.36, CADD 23.10, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- C117Y (p.Cys117Tyr), gnomAD rs1395446219
- L118P (p.Leu118Pro), ExAC rs765893868, TOPMed rs765893868, gnomAD rs765893868, REVEL 0.77, CADD 26.80
- L118R (p.Leu118Arg), ExAC rs765893868, TOPMed rs765893868, gnomAD rs765893868, REVEL 0.78, CADD 25.90
- L118V (p.Leu118Val), gnomAD rs1668565431, REVEL 0.22, CADD 20.30
- W120* (p.Trp120Ter), NCI-TCGA TCGA novel, Variant assessed as somatic; high impact.
- W120C (p.Trp120Cys), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- P121L (p.Pro121Leu), rs765202929, ClinGen CA1581006, ClinVar RCV001204184, ExAC rs765202929, REVEL 0.42, CADD 17.60, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- P121Q (p.Pro121Gln), ExAC rs765202929, TOPMed rs765202929, gnomAD rs765202929, REVEL 0.56, CADD 23.70, Uncertain significance
- P121R (p.Pro121Arg), ExAC rs765202929, TOPMed rs765202929, gnomAD rs765202929, Uncertain significance
- E123K (p.Glu123Lys), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99563, Variant assessed as somatic; moderate impact.
- Y124F (p.Tyr124Phe), rs2466028359, ClinGen CA346401322, ClinVar RCV003794204, Uncertain significance, Retinitis pigmentosa 71; Short-rib thoracic dysplasia 10 with or without polydac
- I125L (p.Ile125Leu), ExAC rs776509019, gnomAD rs776509019, REVEL 0.03, CADD 12.80
- I125N (p.Ile125Asn), gnomAD rs1668563720, REVEL 0.10, CADD 17.40
- I126V (p.Ile126Val), gnomAD rs1370329911, REVEL 0.12, CADD 19.80
- V127I (p.Val127Ile), rs763950958, ClinGen CA1581003, ClinVar RCV001769454, ExAC rs763950958, REVEL 0.11, CADD 15.10, Uncertain significance, not provided
- F128L (p.Phe128Leu), gnomAD rs1252918577, REVEL 0.18, CADD 22.60
- G129R (p.Gly129Arg), NCI-TCGA Cosmic COSV9956, cosmic curated COSV99561, Variant assessed as somatic; moderate impact.
- L130R (p.Leu130Arg), TOPMed rs1388593336, gnomAD rs1388593336, REVEL 0.68, CADD 29.50
- E132D (p.Glu132Asp), ExAC rs772179397, gnomAD rs772179397, NCI-TCGA Cosmic COSV5313, cosmic curated COSV53133, REVEL 0.09, CADD 16.00, Variant assessed as somatic; moderate impact.
- E132K (p.Glu132Lys), NCI-TCGA Cosmic COSV5314, cosmic curated COSV53141, Variant assessed as somatic; moderate impact.
- E132Q (p.Glu132Gln), NCI-TCGA Cosmic COSV5314, Variant assessed as somatic; moderate impact.
- K134* (p.Lys134Ter), ExAC rs745998687, TOPMed rs745998687, gnomAD rs745998687
- K134E (p.Lys134Glu), ExAC rs745998687, TOPMed rs745998687, gnomAD rs745998687, REVEL 0.47, CADD 33.00
- V135A (p.Val135Ala), TOPMed rs1486720022, REVEL 0.69, CADD 29.50, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- V135F (p.Val135Phe), TOPMed rs201476743, gnomAD rs201476743, Uncertain significance
- V135I (p.Val135Ile), rs201476743, ClinGen CA44518436, ClinVar RCV001300883, ClinVar RCV002493587, REVEL 0.14, CADD 23.30, Uncertain significance, Bardet-Biedl syndrome 20; Short-rib thoracic dysplasia 10 with or without polyda
- R136C (p.Arg136Cys), rs753783467, ClinGen CA1580987, NCI-TCGA Cosmic COSV5313, cosmic curated COSV53134, REVEL 0.73, CADD 32.00, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- R136H (p.Arg136His), rs763923637, ClinGen CA1580986, ClinVar RCV001338543, ExAC rs763923637, REVEL 0.70, CADD 27.70, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- L137* (p.Leu137Ter), TOPMed rs1479123351, gnomAD rs1479123351, CADD 36.00
- A138T (p.Ala138Thr), rs1461000488, ClinGen CA346400859, ClinVar RCV001871450, ClinVar RCV002503486, REVEL 0.38, CADD 26.20, Uncertain significance, Bardet-Biedl syndrome 20; Retinitis pigmentosa 71; Short-rib thoracic dysplasia
- T140I (p.Thr140Ile), gnomAD rs1328218116, REVEL 0.07, CADD 21.80
- K141E (p.Lys141Glu), rs760582917, ClinGen CA1580985, ClinVar RCV001909082, ClinVar RCV002490220, REVEL 0.37, CADD 27.70, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Bardet-Biedl syndro
- K141T (p.Lys141Thr), ExAC rs752403521, gnomAD rs752403521, REVEL 0.36, CADD 26.90
- T142P (p.Thr142Pro), gnomAD rs1333070754, REVEL 0.46, CADD 26.40
- N143H (p.Asn143His), gnomAD rs1668543976, REVEL 0.47, CADD 25.70
- N143K (p.Asn143Lys), rs767828329, ClinGen CA346400698, ClinVar RCV002592059, ExAC rs767828329, AlphaMissense 0.94, MetaLR 0.36, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- S145* (p.Ser145Ter), gnomAD rs1440225222, CADD 36.00
- S146C (p.Ser146Cys), NCI-TCGA Cosmic COSV5313, NCI-TCGA Cosmic COSV5314, cosmic curated COSV53140, Variant assessed as somatic; moderate impact.
- S146Y (p.Ser146Tyr), NCI-TCGA Cosmic COSV5313, cosmic curated COSV53134, NCI-TCGA Cosmic COSV5314, Variant assessed as somatic; moderate impact.
- I148T (p.Ile148Thr), Ensembl rs371617289, REVEL 0.37, CADD 23.90
- I148V (p.Ile148Val), rs759861487, ClinGen CA1580982, cosmic curated COSV53137, ClinVar RCV001372716, REVEL 0.06, CADD 20.20, Uncertain significance, Short-rib thoracic dysplasia 10 with or without polydactyly; Retinitis pigmentos
- Y149C (p.Tyr149Cys), TOPMed rs1161989952, gnomAD rs1161989952, REVEL 0.59, CADD 27.80
Public IFT172 analysis runs
- IFT172 analysis run — IFT172 (2,187 variants) — completed 2026-08-21