FKRP (Q9H9S5) variants and mutations
FKRP (also known as Q9H9S5) is a human protein-coding gene encoding a ribitol 5-phosphate transferase protein. It is required for proper glycosylation of alpha-dystroglycan, enabling muscle fibers and other cells to attach effectively to extracellular matrix. Biallelic pathogenic variants cause dystroglycanopathies ranging from limb-girdle muscular dystrophy to severe congenital muscular dystrophy with brain or eye involvement. This analysis covers 1,375 FKRP variants and mutations. Of these, 88% have computational variant effect predictions. Disease context includes autosomal recessive limb-girdle muscular dystrophy type 2I, muscular dystrophy-dystroglycanopathy type B5, and muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies). Example FKRP variants include M1?, M1L, and M1V.
Variant analysis overview
- Gene: FKRP
- Protein: Q9H9S5
- UniProt accession: Q9H9S5
- Organism: Homo sapiens
- Variants analyzed: 1375
- Variant scope: all variants
- Completed: 2026-08-21
Variant and mutation evidence
- Variant composition: 918 unspecified-consequence records; 271 missense variants; 147 synonymous variants; 19 frameshift variants; 7 in-frame deletions; 1 incomplete terminal codon variant; 8 stop-gained variants; 1 protein altering variant; 1 in-frame insertions; 4 substitution
- Prediction scores: 1,205 variants have prediction scores (88% of the analyzed set).
Clinical, disease, and population context
- Disease context: 25 disease associations are represented. Top associations: autosomal recessive limb-girdle muscular dystrophy type 2I, muscular dystrophy-dystroglycanopathy type B5, muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), muscular dystrophy-dystroglycanopathy, type A, myopathy caused by variation in FKRP, muscular dystrophy-dystroglycanopathy (congenital with impaired intellectual dev, Abnormality of the cardiovascular system, autosomal recessive limb-girdle muscular dystrophy, neurodegenerative disease, muscle-eye-brain disease, limb-girdle muscular dystrophy, muscular dystrophy-dystroglycanopathy.
Protein structure and variant hotspots
- Protein features: 1 transmembrane segments; 12 binding sites; 2 post-translational modification sites.
- Structural context: 76 variants have structural context.
- PTM context: 3 variants overlap post-translational modification sites.
Data sources
Evidence in this analysis draws on EBI Proteins Variation, UniProt, gnomAD v4, EuropePMC, 3D Hotspot Analysis, Interaction Network Analysis, Protein Data Bank, AlphaFold DB, gnomAD constraint, Open Targets, MaveDB, LitVar.
Notable FKRP variants
Examples include M1?, M1L, M1V, R2L, R2Q, R2W, R2G, R2R. Listed records include available protein-change notation, database identifiers, clinical classifications, computational predictions, population evidence, experimental measurements, and disease context.
- M1?, NCI-TCGA Cosmic COSV5935, cosmic curated COSV59359, Variant assessed as somatic; high impact.
- M1L (p.Met1Leu), rs587777223, ClinGen CA406494470, ClinVar RCV001384814, Pathogenic, Walker-Warburg congenital muscular dystrophy
- M1V (p.Met1Val), rs587777223, ClinGen CA150773, ClinVar RCV000106303, ClinVar RCV000323348, Pathogenic, not provided
- R2L (p.Arg2Leu), rs1308459613, ClinGen CA406494481, ClinVar RCV000524840, TOPMed rs1308459613, REVEL 0.83, CADD 27.30, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R2Q (p.Arg2Gln), rs1308459613, ClinGen CA406494479, ClinVar RCV003068924, TOPMed rs1308459613, REVEL 0.71, CADD 24.50, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R2W (p.Arg2Trp), rs748272589, ClinGen CA9532088, ClinVar RCV000822659, ClinVar RCV001825665, REVEL 0.80, CADD 26.10, Uncertain significance, Cardiovascular phenotype; not provided; Walker-Warburg congenital muscular dystr
- R2G (p.Arg2Gly), gnomAD 19-46755454-C-G, REVEL 0.81, CADD 25.20
- R2R (p.Arg2Arg), rs748272589, gnomAD 19-46755454-C-A, CADD 10.30
- L3P (p.Leu3Pro), Ensembl rs2054888065
- L3V (p.Leu3Val), gnomAD rs1329306715, REVEL 0.46, CADD 17.60, Uncertain significance, Cardiovascular phenotype
- L3F (p.Leu3Phe), gnomAD 19-46755457-C-T, REVEL 0.48, CADD 21.80
- L3I (p.Leu3Ile), gnomAD 19-46755457-C-A, REVEL 0.40, CADD 14.80
- L3L (p.Leu3Leu), rs756295058, gnomAD 19-46755459-C-T, CADD 10.60
- T4A (p.Thr4Ala), rs778085300, ClinGen CA9532091, ClinVar RCV003224679, ClinVar RCV003341554, REVEL 0.44, CADD 21.70, Uncertain significance, Muscular dystrophy-dystroglycanopathy type B5; Autosomal recessive limb-girdle m
- T4I (p.Thr4Ile), ExAC rs771333733, TOPMed rs771333733, gnomAD rs771333733, REVEL 0.50, CADD 21.60, Uncertain significance
- T4P (p.Thr4Pro), ExAC rs778085300, TOPMed rs778085300, gnomAD rs778085300, REVEL 0.45, CADD 22.80, Uncertain significance
- T4S (p.Thr4Ser), rs771333733, ClinGen CA9532092, ClinVar RCV000382342, ClinVar RCV000466132, REVEL 0.44, CADD 16.70, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Autosomal recessive limb-girdle mu
- T4T (p.Thr4Thr), gnomAD 19-46755462-C-T, CADD 5.75
- R5C (p.Arg5Cys), rs1060502108, ClinGen CA16616284, ClinVar RCV000465267, ClinVar RCV001828467, REVEL 0.51, CADD 23.80, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R5H (p.Arg5His), cosmic curated COSV59359, REVEL 0.40, CADD 23.70
- R5P (p.Arg5Pro), gnomAD rs1270612767, REVEL 0.63, CADD 24.40
- R5S (p.Arg5Ser), TOPMed rs1060502108, gnomAD rs1060502108, REVEL 0.48, CADD 20.00, Uncertain significance
- R5L (p.Arg5Leu), gnomAD 19-46755464-G-T, REVEL 0.41, CADD 20.90
- R5R (p.Arg5Arg), rs1221940943, gnomAD 19-46755465-C-A, CADD 9.98
- C6R (p.Cys6Arg), rs2122606907, ClinGen CA406494496, ClinVar RCV001962642, Ensembl rs2122606907, REVEL 0.72, CADD 23.90, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy
- C6S (p.Cys6Ser), gnomAD 19-46755466-T-A, REVEL 0.74, CADD 23.50
- C6F (p.Cys6Phe), gnomAD 19-46755467-G-T, REVEL 0.64, CADD 24.00
- C6Y (p.Cys6Tyr), gnomAD 19-46755467-G-A, REVEL 0.53, CADD 23.80
- C6C (p.Cys6Cys), rs373388363, gnomAD 19-46755468-C-T, CADD 12.10
- Q7* (p.Gln7Ter), rs2513984206, ClinGen CA406494506, ClinVar RCV002308725, CADD 36.00, Likely pathogenic
- Q7H (p.Gln7His), gnomAD rs1487436628, REVEL 0.49, CADD 17.90
- Q7R (p.Gln7Arg), gnomAD 19-46755467-GC-G, CADD 24.90
- Q7P (p.Gln7Pro), gnomAD 19-46755470-A-C, REVEL 0.59, CADD 23.00
- A8G (p.Ala8Gly), ExAC rs746377232, gnomAD rs746377232, REVEL 0.36, CADD 18.50
- A8T (p.Ala8Thr), rs1178928336, ClinGen CA406494512, ClinVar RCV001919234, ClinVar RCV002425258, REVEL 0.41, CADD 22.50, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- A8L (p.Ala8Leu), gnomAD 19-46755470-AG-A, CADD 24.00
- A8P (p.Ala8Pro), gnomAD 19-46755472-G-C, REVEL 0.71, CADD 24.00
- A8S (p.Ala8Ser), gnomAD 19-46755472-G-T, REVEL 0.42, CADD 21.60
- A8D (p.Ala8Asp), gnomAD 19-46755473-C-A, REVEL 0.62, CADD 21.50
- A8A (p.Ala8Ala), gnomAD 19-46755474-T-C, CADD 13.30
- A9V (p.Ala9Val), rs772755355, ClinGen CA9532095, cosmic curated COSV10738, ClinVar RCV003071420, REVEL 0.21, CADD 8.65, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- A9T (p.Ala9Thr), gnomAD 19-46755475-G-A, REVEL 0.39, CADD 22.50
- A9S (p.Ala9Ser), gnomAD 19-46755475-G-T, REVEL 0.41, CADD 23.20
- A9A (p.Ala9Ala), rs1157201899, gnomAD 19-46755477-C-G, CADD 3.90
- L10L (p.Leu10Leu), gnomAD 19-46755478-C-T, CADD 7.99
- L10P (p.Leu10Pro), gnomAD 19-46755479-T-C, REVEL 0.82, CADD 24.30
- L10R (p.Leu10Arg), gnomAD 19-46755479-T-G, REVEL 0.75, CADD 24.00
- A11V (p.Ala11Val), rs760295001, ClinGen CA9532097, cosmic curated COSV10964, ClinVar RCV001214515, REVEL 0.45, CADD 18.40, Uncertain significance, not specified
- A11E (p.Ala11Glu), gnomAD 19-46755482-C-A, REVEL 0.58, CADD 21.50
- A11G (p.Ala11Gly), gnomAD 19-46755482-C-G, REVEL 0.54, CADD 25.00
- A11A (p.Ala11Ala), gnomAD 19-46755483-G-A, CADD 6.78
- A12P (p.Ala12Pro), Ensembl rs2122607234
- A12V (p.Ala12Val), NCI-TCGA TCGA novel, REVEL 0.39, CADD 16.90, Variant assessed as somatic; moderate impact.
- A12S (p.Ala12Ser), gnomAD 19-46755484-G-T, REVEL 0.42, CADD 21.70
- A12T (p.Ala12Thr), gnomAD 19-46755484-G-A, REVEL 0.46, CADD 21.80
- A12D (p.Ala12Asp), gnomAD 19-46755485-C-A, REVEL 0.67, CADD 22.80
- A12G (p.Ala12Gly), gnomAD 19-46755485-C-G, REVEL 0.41, CADD 18.20
- A12A (p.Ala12Ala), gnomAD 19-46755486-C-T, CADD 7.18
- A13S (p.Ala13Ser), ExAC rs768376273, gnomAD rs768376273, REVEL 0.74, CADD 25.90, Uncertain significance
- A13T (p.Ala13Thr), rs768376273, ClinGen CA9532098, ClinVar RCV000543616, ClinVar RCV000786132, REVEL 0.64, CADD 24.60, Uncertain significance, not provided; Walker-Warburg congenital muscular dystrophy; Cardiovascular pheno
- I14N (p.Ile14Asn), TOPMed rs2054889065, gnomAD rs2054889065, REVEL 0.83, CADD 26.60
- I14I (p.Ile14Ile), gnomAD 19-46755492-C-A, CADD 8.48
- T15I (p.Thr15Ile), rs2054889166, ClinGen CA406494554, ClinVar RCV001309029, ClinVar RCV005614516, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- T15P (p.Thr15Pro), rs886042998, ClinGen CA10604973, ClinVar RCV000380326, ClinVar RCV001366726, REVEL 0.60, CADD 19.30, Uncertain significance, not provided; Cardiovascular phenotype; Walker-Warburg congenital muscular dystr
- T15N (p.Thr15Asn), gnomAD 19-46755494-C-A, REVEL 0.37, CADD 15.90
- T15T (p.Thr15Thr), gnomAD 19-46755495-C-G, CADD 3.88
- L16F (p.Leu16Phe), gnomAD rs1348526409, REVEL 0.41, CADD 22.00
- L16I (p.Leu16Ile), cosmic curated COSV59360, REVEL 0.45, CADD 14.90
- L16V (p.Leu16Val), gnomAD 19-46755496-C-G, REVEL 0.40, CADD 13.50
- L16L (p.Leu16Leu), rs776358648, gnomAD 19-46755498-C-T, CADD 10.70
- N17S (p.Asn17Ser), ExAC rs761445941, TOPMed rs761445941, gnomAD rs761445941, REVEL 0.63, CADD 23.10
- L18F (p.Leu18Phe), rs1226848053, ClinGen CA406494568, ClinVar RCV000658156, ClinVar RCV001050758, REVEL 0.56, CADD 23.50, Uncertain significance, not provided; Walker-Warburg congenital muscular dystrophy
- L18V (p.Leu18Val), TOPMed rs1226848053, gnomAD rs1226848053, Uncertain significance
- L18I (p.Leu18Ile), gnomAD 19-46755502-C-A, REVEL 0.45, CADD 20.50
- L18L (p.Leu18Leu), rs565563742, gnomAD 19-46755504-T-A, CADD 7.00
- L19V (p.Leu19Val), gnomAD rs1408622539, REVEL 0.54, CADD 21.80
- L19M (p.Leu19Met), gnomAD 19-46755505-C-A, REVEL 0.60, CADD 23.70
- L19P (p.Leu19Pro), gnomAD 19-46755506-T-C, REVEL 0.82, CADD 24.30
- L19L (p.Leu19Leu), rs2122607618, gnomAD 19-46755507-G-A, CADD 10.70
- V20A (p.Val20Ala), rs750241299, ClinGen CA9532102, ClinVar RCV001246809, ClinVar RCV003145488, REVEL 0.43, CADD 22.60, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy; not prov
- V20I (p.Val20Ile), gnomAD rs1285912465, REVEL 0.36, CADD 14.70
- V20V (p.Val20Val), rs1228553738, gnomAD 19-46755510-C-A, CADD 7.24
- L21F (p.Leu21Phe), rs2054889669, ClinGen CA406494585, ClinVar RCV002366446, gnomAD rs2054889669, REVEL 0.26, CADD 12.60, Uncertain significance, Cardiovascular phenotype
- F22L (p.Phe22Leu), gnomAD 19-46755516-C-G, REVEL 0.42, CADD 18.90
- F22F (p.Phe22Phe), rs995818740, gnomAD 19-46755516-C-T, CADD 11.80
- Y23C (p.Tyr23Cys), rs201951207, ClinGen CA9532103, ClinVar RCV000821581, ClinVar RCV001825661, REVEL 0.80, CADD 25.30, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy; Muscular
- Y23Y (p.Tyr23Tyr), rs954656663, gnomAD 19-46755519-T-C, CADD 6.42
- S25* (p.Ser25Ter), rs766339195, ClinVar RCV000226653, ExAC rs766339195, TOPMed rs766339195, Likely pathogenic
- S25L (p.Ser25Leu), cosmic curated COSV59360, ExAC rs766339195, TOPMed rs766339195, gnomAD rs766339195, REVEL 0.58, CADD 22.50
- S25P (p.Ser25Pro), gnomAD rs1206533071, REVEL 0.75, CADD 22.90
- S25W (p.Ser25Trp), ExAC rs766339195, TOPMed rs766339195, gnomAD rs766339195
- S25S (p.Ser25Ser), rs1555738032, gnomAD 19-46755525-G-T, CADD 0.96
- W26* (p.Trp26Ter), rs2513984718, ClinVar RCV004576605, CADD 44.00, Likely pathogenic
- W26L (p.Trp26Leu), rs752731569, ClinGen CA9532105, ClinVar RCV001313796, ExAC rs752731569, REVEL 0.46, CADD 22.70, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- W26R (p.Trp26Arg), Ensembl rs1393495869, REVEL 0.41, CADD 16.60
- L27L (p.Leu27Leu), gnomAD 19-46755531-G-T, CADD 10.50
- Q28* (p.Gln28Ter), rs2513984747, ClinGen CA2739276923, ClinVar RCV003755664, CADD 37.00, Pathogenic
- Q28E (p.Gln28Glu), rs1060502110, ClinGen CA16616295, ClinVar RCV000467867, ClinVar RCV000594457, REVEL 0.51, CADD 23.80, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy; not prov
- Q28H (p.Gln28His), gnomAD rs1473222153, Uncertain significance, Cardiovascular phenotype
- Q28L (p.Gln28Leu), ExAC rs756205019, gnomAD rs756205019, Uncertain significance
- Q28R (p.Gln28Arg), rs756205019, ClinGen CA406494631, ClinVar RCV001241408, ClinVar RCV001828976, Uncertain significance, Walker-Warburg congenital muscular dystrophy; not provided
- H29N (p.His29Asn), rs886043192, ClinGen CA406494634, ClinVar RCV002447977, Uncertain significance, Cardiovascular phenotype
- H29Q (p.His29Gln), Ensembl rs112243410, REVEL 0.43, CADD 12.80
- H29R (p.His29Arg), rs777793760, ClinGen CA9532107, cosmic curated COSV10810, ClinVar RCV003098911, REVEL 0.47, CADD 17.90, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- H29Y (p.His29Tyr), rs886043192, ClinGen CA10605222, ClinVar RCV000282353, ClinVar RCV001347668, REVEL 0.46, CADD 22.00, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype; not prov
- Q30* (p.Gln30Ter), rs2513984831, ClinGen CA406494641, ClinVar RCV003461573, CADD 37.00, Likely pathogenic
- Q30Q (p.Gln30Gln), gnomAD 19-46755540-G-A, CADD 8.84
- Q30H (p.Gln30His), gnomAD 19-46755540-G-T, REVEL 0.49, CADD 23.80
- P31S (p.Pro31Ser), rs2513984849, ClinGen CA406494649, ClinVar RCV002926950, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- N33D (p.Asn33Asp), rs2513984856, ClinGen CA406494661, ClinVar RCV002825341, ClinVar RCV004990879, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- N33S (p.Asn33Ser), NCI-TCGA Cosmic COSV5935, cosmic curated COSV59359, Variant assessed as somatic; moderate impact.
- S34C (p.Ser34Cys), TOPMed rs1453156955, gnomAD rs1453156955, REVEL 0.29, CADD 18.70, Uncertain significance
- S34F (p.Ser34Phe), rs1453156955, ClinGen CA406494673, ClinVar RCV001972148, ClinVar RCV004996132, REVEL 0.26, CADD 15.50, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy
- S34T (p.Ser34Thr), rs2513984861, ClinGen CA406494668, ClinVar RCV003172573, REVEL 0.26, CADD 11.70, Uncertain significance, Cardiovascular phenotype
- R35L (p.Arg35Leu), ExAC rs754088436, gnomAD rs754088436, REVEL 0.43, CADD 15.10, Uncertain significance
- R35P (p.Arg35Pro), ExAC rs754088436, gnomAD rs754088436, REVEL 0.39, CADD 17.40, Uncertain significance
- R35Q (p.Arg35Gln), rs754088436, ClinGen CA406494676, ClinVar RCV001347816, ClinVar RCV005340825, REVEL 0.30, CADD 16.70, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- R35W (p.Arg35Trp), rs1157545139, ClinGen CA406494675, cosmic curated COSV59359, ClinVar RCV001984748, REVEL 0.40, CADD 16.10, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R35R (p.Arg35Arg), gnomAD 19-46755553-C-A, CADD 7.73
- R35G (p.Arg35Gly), gnomAD 19-46755553-C-G, REVEL 0.41, CADD 13.20
- A36S (p.Ala36Ser), rs1412050261, ClinGen CA406494678, ClinVar RCV001241301, ClinVar RCV001828973, REVEL 0.26, CADD 4.00, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy
- A36T (p.Ala36Thr), cosmic curated COSV10882
- A36V (p.Ala36Val), Ensembl rs2054890871
- p.Ala36 Arg48del, gnomAD 19-46755550-TCCCG, CADD 18.00
- A36A (p.Ala36Ala), rs757482530, gnomAD 19-46755558-C-T, CADD 7.71
- R37Q (p.Arg37Gln), rs779317138, ClinGen CA9532110, NCI-TCGA Cosmic COSV5935, cosmic curated COSV59359, REVEL 0.35, CADD 16.90, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy
- R37W (p.Arg37Trp), TOPMed rs867239704, REVEL 0.31, CADD 20.60
- R37R (p.Arg37Arg), gnomAD 19-46755559-C-A, CADD 6.75
- R37P (p.Arg37Pro), gnomAD 19-46755560-G-C, REVEL 0.39, CADD 22.40
- R37L (p.Arg37Leu), gnomAD 19-46755560-G-T, REVEL 0.42, CADD 17.70
- G38E (p.Gly38Glu), rs1599933942, ClinGen CA406494692, ClinVar RCV000801890, Ensembl rs1599933942, REVEL 0.40, CADD 12.80, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- G38R (p.Gly38Arg), Ensembl rs2054891162, REVEL 0.33, CADD 14.10
- G38V (p.Gly38Val), NCI-TCGA TCGA novel, Variant assessed as somatic; moderate impact.
- G38A (p.Gly38Ala), gnomAD 19-46755563-G-C, REVEL 0.37, CADD 10.20
- G38G (p.Gly38Gly), rs878855079, gnomAD 19-46755564-G-A, CADD 0.06
- P39A (p.Pro39Ala), ExAC rs772667330, gnomAD rs772667330, REVEL 0.24, CADD 0.72, Uncertain significance, Cardiovascular phenotype
- P39S (p.Pro39Ser), rs772667330, ClinGen CA9532113, cosmic curated COSV59360, ClinVar RCV001923157, REVEL 0.25, CADD 1.02, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- P39del (p.Pro39del), gnomAD 19-46755564-GCCC-, CADD 6.47
- P39P (p.Pro39Pro), gnomAD 19-46755567-C-T, CADD 0.42
- R40G (p.Arg40Gly), NCI-TCGA TCGA novel, REVEL 0.33, CADD 12.30, Variant assessed as somatic; moderate impact.
- R40H (p.Arg40His), rs2054891509, ClinGen CA406494700, ClinVar RCV001563920, ClinVar RCV001563921, REVEL 0.33, CADD 14.80, Uncertain significance, Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies)
- R40S (p.Arg40Ser), rs1015213074, ClinGen CA309099198, ClinVar RCV002616475, ClinVar RCV004621737, REVEL 0.37, CADD 9.24, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- R40V (p.Arg40Val), gnomAD 19-46755559-CG-C, CADD 23.60
- R40P (p.Arg40Pro), gnomAD 19-46755564-G-GC, CADD 15.00
- R40C (p.Arg40Cys), gnomAD 19-46755568-C-T, REVEL 0.37, CADD 16.50
- R41H (p.Arg41His), rs201497063, ClinGen CA406494706, cosmic curated COSV10882, ClinVar RCV001979668, REVEL 0.18, CADD 13.70, Uncertain significance, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- R41L (p.Arg41Leu), rs201497063, ClinGen CA9532114, ClinVar RCV000552107, ClinVar RCV001829569, REVEL 0.22, CADD 17.20, Uncertain significance, Cardiovascular phenotype; Walker-Warburg congenital muscular dystrophy; Muscular
- R41S (p.Arg41Ser), rs2122609166, ClinGen CA406494704, ClinVar RCV001974430, Ensembl rs2122609166, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R41C (p.Arg41Cys), gnomAD 19-46755571-C-T, REVEL 0.34, CADD 20.80
- A42G (p.Ala42Gly), rs768215450, ClinGen CA9532115, ClinVar RCV001048305, ClinVar RCV004031500, REVEL 0.21, CADD 4.87, Conflicting interpretations, Walker-Warburg congenital muscular dystrophy; Cardiovascular phenotype
- A42V (p.Ala42Val), ExAC rs768215450, gnomAD rs768215450, REVEL 0.19, CADD 8.43, Likely benign
- A42S (p.Ala42Ser), gnomAD 19-46755574-G-T, REVEL 0.22, CADD 4.39
- A42D (p.Ala42Asp), gnomAD 19-46755575-C-A, REVEL 0.24, CADD 9.28
- A42A (p.Ala42Ala), gnomAD 19-46755576-C-T, CADD 1.37
- S43C (p.Ser43Cys), rs1555738085, ClinGen CA406494717, ClinVar RCV000577932, ClinVar RCV000578007, REVEL 0.33, CADD 15.30, Uncertain significance, Cardiovascular phenotype; Muscular dystrophy-dystroglycanopathy type B5; Autosom
- S43F (p.Ser43Phe), gnomAD 19-46755578-C-T, REVEL 0.34, CADD 15.50
- A44T (p.Ala44Thr), gnomAD 19-46755580-G-A, REVEL 0.21, CADD 3.32
- A44S (p.Ala44Ser), gnomAD 19-46755580-G-T, REVEL 0.28, CADD 0.75
- A44D (p.Ala44Asp), gnomAD 19-46755581-C-A, REVEL 0.36, CADD 8.50
- A44A (p.Ala44Ala), gnomAD 19-46755582-T-C, CADD 4.29
- A45P (p.Ala45Pro), Ensembl rs2054891780
- A45V (p.Ala45Val), Ensembl rs2122609374, REVEL 0.24, CADD 2.01
- A45T (p.Ala45Thr), gnomAD 19-46755583-G-A, REVEL 0.19, CADD 0.03
- A45D (p.Ala45Asp), gnomAD 19-46755584-C-A, REVEL 0.32, CADD 1.29
- A45A (p.Ala45Ala), rs2287717, gnomAD 19-46755585-C-T, CADD 1.61
- G46C (p.Gly46Cys), cosmic curated COSV10738, REVEL 0.43, CADD 22.50
- G46S (p.Gly46Ser), cosmic curated COSV59358, gnomAD rs1216050476, REVEL 0.28, CADD 7.73
- G46V (p.Gly46Val), gnomAD 19-46755587-G-T, REVEL 0.47, CADD 18.60
- G46D (p.Gly46Asp), gnomAD 19-46755587-G-A, REVEL 0.41, CADD 17.00
- G46G (p.Gly46Gly), gnomAD 19-46755588-C-A, CADD 0.76
- P47H (p.Pro47His), ExAC rs761512840, gnomAD rs761512840, REVEL 0.58, CADD 22.70
- P47L (p.Pro47Leu), ExAC rs761512840, gnomAD rs761512840, REVEL 0.57, CADD 20.70
- P47R (p.Pro47Arg), ExAC rs761512840, gnomAD rs761512840, REVEL 0.58, CADD 16.60
- P47S (p.Pro47Ser), TOPMed rs2054892039, gnomAD rs2054892039, REVEL 0.49, CADD 13.70
- P47P (p.Pro47Pro), gnomAD 19-46755591-C-T, CADD 4.07
- R48C (p.Arg48Cys), NCI-TCGA Cosmic COSV5935, cosmic curated COSV59358, REVEL 0.62, CADD 23.70, Variant assessed as somatic; moderate impact.
- R48P (p.Arg48Pro), gnomAD rs1202967308, REVEL 0.67, CADD 18.90
- R48S (p.Arg48Ser), rs2054892239, ClinGen CA406494742, ClinVar RCV001320835, Ensembl rs2054892239, REVEL 0.54, CADD 14.90, Uncertain significance, Walker-Warburg congenital muscular dystrophy
- R48V (p.Arg48Val), rs1555738103, gnomAD 19-46755587-GC-G, CADD 11.90
- R48H (p.Arg48His), gnomAD 19-46755593-G-A, REVEL 0.42, CADD 14.20
Public FKRP analysis runs
- FKRP analysis run — FKRP (1,375 variants) — completed 2026-08-21