S2C (p.Ser2Cys) variant of CHEK2 (O96017)
S2C (p.Ser2Cys) in CHEK2 (O96017) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as uncertain significance in the context of Familial cancer of breast. The available variant effect predictions contribute to a CATVariant prioritization score of 0.65 / 1. The record also includes published literature and structural context.
S2C (p.Ser2Cys) variant details
- p.Ser2Cys
- rs1417811260
- ClinGen CA411092155
- ClinVar RCV003023600
- TOPMed rs1417811260
- Uncertain significance
- Familial cancer of breast
- Missense
- Variant Prioritization Score for Impact Estimate 0.649
- AlphaMissense 0.13
- MetaLR 0.82
- MetaSVM 0.48
- PolyPhen-2 0.99
- SIFT 0.00
- MutPred 0.23
- ClinVar: Uncertain significance (Familial cancer of breast)
- EBI: Variant of uncertain significance
- UniProt: Uncertain significance
- Structural context available
- Cited in: Genetic cancer risk assessment and counseling: recommendations of the national society of genetic counselors. (PMID 15604628)
- Cited in: Risk assessment and genetic counseling for hereditary breast and ovarian cancer: recommendations of the National… (PMID 17508274)