R3P (p.Arg3Pro) variant of CHEK2 (O96017)
R3P (p.Arg3Pro) in CHEK2 (O96017) is a missense change. Clinical records from ClinVar, EBI, and UniProt describe it as uncertain significance in the context of Familial cancer of breast; Hereditary cancer-predisposing syndrome. The available variant effect predictions contribute to a CATVariant prioritization score of 0.46 / 1. The record also includes published literature and structural context.
R3P (p.Arg3Pro) variant details
- p.Arg3Pro
- rs779607427
- ClinGen CA411092139
- ClinVar RCV000581177
- ClinVar RCV003767305
- Uncertain significance
- Familial cancer of breast; Hereditary cancer-predisposing syndrome
- Missense
- Variant Prioritization Score for Impact Estimate 0.457
- AlphaMissense 0.11
- MetaLR 0.52
- MetaSVM -0.30
- PolyPhen-2 0.00
- SIFT 0.09
- MutPred 0.24
- ClinVar: Uncertain significance (Familial cancer of breast; Hereditary cancer-predisposing syndro)
- EBI: Variant of uncertain significance
- UniProt: Uncertain significance
- Structural context available
- Cited in: Genetic cancer risk assessment and counseling: recommendations of the national society of genetic counselors. (PMID 15604628)
- Cited in: Risk assessment and genetic counseling for hereditary breast and ovarian cancer: recommendations of the National… (PMID 17508274)